SSI390
Library SS
(Link to library)
Clone ID SSI390
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16580-1
Original site URL
Representative seq. ID SSI390Z
(Link to Original site)
Representative DNA sequence
>SSI390 (SSI390Q) /CSM/SS/SSI3-D/SSI390Q.Seq.d/
XXXXXXXXXXATAAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATAAAA
AAGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAAAAAAAAAACTTT
TAAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCC
CCCTTTGCTCTGCATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCCCCTAACGATGCT
CCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTATAAG
CAGTCTTTAACAAAAAAAAATATTTAAAAAAAAAAAAAAAAGAAAAAAAAAAAATATTAA
AATATTTTTTTCAAAATCAATTTTAAATATAAATAATAATGTTTTTTTTTTTTTATAAAA
AAAAGAAAGAAAAAAAGA
sequence update 1998. 1. 6
Translated Amino Acid sequence
---kkk***aipwdlekikkfkkkiknnkk*kknkkknf*nspstfwcfc*ANAKVSLSP
FALHYSPQAQIISSSPNDAPQVSSGLIHHIPMQLSQMYKQSLTKKNI*kkkkkkkkky*n
iffkinfkyk**cffffikkrkkkr


Translated Amino Acid sequence (All Frames)
Frame A:
---*kkiiisytmglrenkkv*kknkk**kikkk*kkkllklsfyflvllls*c*gvslp
lcsallssssdnlelp*rcsssilrvnpshsyatlsnv*avfnkkkylkkkkkekkkilk
yffqnqf*i*iimffffykkkkekk


Frame B:
---kkk***aipwdlekikkfkkkiknnkk*kknkkknf*nspstfwcfc*ANAKVSLSP
FALHYSPQAQIISSSPNDAPQVSSGLIHHIPMQLSQMYKQSLTKKNI*kkkkkkkkky*n
iffkinfkyk**cffffikkrkkkr


Frame C:
---kknnnklyhgt*rk*kslkkk*kiiknkkkikkktfktllllfgasvklmlrclspp
llcitllklr*srapltmllkypqg*sitflcnslkcissl*qkkifkkkkkrkkkniki
ffsksilninnnvfffl*kkerkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSI390 (SSI390Q) /CSM/SS/SSI3-D/SSI390Q.Seq.d/ 387 e-106
SSI227 (SSI227Q) /CSM/SS/SSI2-B/SSI227Q.Seq.d/ 379 e-104
VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/ 371 e-102
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/ 371 e-102
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/ 371 e-102
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/ 371 e-102
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/ 371 e-102
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/ 371 e-102
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/ 371 e-102
SSL845 (SSL845Q) /CSM/SS/SSL8-B/SSL845Q.Seq.d/ 371 e-102

own update 2004. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

D16417|D16417.1 Dictyostelium discoideum mRNA. 371 e-127 3
CC245494|CC245494.1 CH261-54C11_Sp6.1 CH261 Gallus gallus genomic clone CH261-54C11, DNA sequence. 48 0.090 1
AZ356349|AZ356349.1 1M0097H20F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0097H20 F, DNA sequence. 48 0.090 1
BI745034|BI745034.1 rk95d06.y1 Meloidogyne javanica egg pAMP1 v6 Chiapelli McCarter Meloidogyne javanica cDNA 5', mRNA sequence. 38 0.17 2
BH008429|BH008429.1 ef15e10.x1 TO1000 Brassica oleracea genomic clone ef15e10 5', DNA sequence. 36 0.17 2
BH999320|BH999320.1 oeh12f10.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 36 0.22 2
BZ463651|BZ463651.1 BONRK12TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRK12, DNA sequence. 46 0.35 1
AC084045|AC084045.15 Mus musculus chromosome 1 clone RP23-357A20, WORKING DRAFT SEQUENCE, 7 unordered pieces. 46 0.35 1
AC116978|AC116978.1 Dictyostelium discoideum chromosome 2 map 4846697-4874480 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 34 0.64 3
AC098059|AC098059.9 Rattus norvegicus clone CH230-126O9, WORKING DRAFT SEQUENCE, 3 unordered pieces. 44 1.4 1
dna update 2003. 7.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000301_2481(CP000301|pid:none) Rhodopseudomonas palustris BisB... 33 2.3

protein update 2009. 2. 1
PSORT

psg: 0.90 gvh: 0.38 alm: 0.51 top: 0.37 tms: 0.00 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: cytoskeletal

>> prediction for SSI390 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI390Z
3' end seq.
>SSI390Z.Seq
----------ATAAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATAAAA
AAGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAAAAAAAAAACTTT
TAAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCC
CCCTTTGCTCTGCATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCCCCTAACGATGCT
CCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTATAAG
CAGTCTTTAACAAAAAAAAATATTTAAAAAAAAAAAAAAAAGAAAAAAAAAAAATATTAA
AATATTTTTTTCAAAATCAATTTTAAATATAAATAATAATGTTTTTTTTTTTTTATAAAA
AAAAGAAAGAAAAAAAGA
Length of 3' end seq. 428
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -