SSI387
Library SS
(Link to library)
Clone ID SSI387
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12201-1
Original site URL
Representative seq. ID SSI387Z
(Link to Original site)
Representative DNA sequence
>SSI387 (SSI387Q) /CSM/SS/SSI3-D/SSI387Q.Seq.d/
XXXXXXXXXXGCATTCACTCCAAATCAAGATCCAGAATTCATTATCAAGTTAACAACTGA
AGATTCAATTCAAACAGCAAGGGATATTTTATCTGGAAAGGAAACTGAAAAACTTCACGT
ATTAGGAAGAATTAAAAAAAATCAAGCATTTTATAACCCAAATTATTCTTTCCATTTAGA
TGAGAATACCATATCATTTTTTACTATTGCAATTGAAGTTTGTGATGCCTCACTTTCTTA
TGTTCAAGATCATATTGATGAAGCATGTGGAGCTTTCCTTCCTGGTTGCTTTTATTGCCC
ATGGTCAAGCAAATTAACAAGAGAAGTTACACCATCAGAACTTTAATGTTTTTTCAAATA
ATTTTTTGTTTGTTTATTCATTTAAAAGTTGTTTTTATATCTTTTTTTCATTTGAACAAG
AACATACAAAAATCCAAGATTTTTTATTAAAAAAAAAAAAAAAATAAAATAAAAAAAAAA
AA
sequence update 1998. 1. 6
Translated Amino Acid sequence
---FTPNQDPEFIIKLTTEDSIQTARDILSGKETEKLHVLGRIKKNQAFYNPNYSFHLDE
NTISFFTIAIEVCDASLSYVQDHIDEACGAFLPGCFYCPWSSKLTREVTPSEL*cffk*f
fvclfi*klflylffi*trtyknprffikkkkkik*kkk


Translated Amino Acid sequence (All Frames)
Frame A:
---hslqikiqnslss*qlkiqfkqqgifylerklknfty*eelkkikhfitqiilsi*m
ripyhflllqlkfvmphflmfkiilmkhvelsflvafiahgqan*qeklhhqnfnvfsnn
flfvysfkscfyiffsfeqehtkiqdfllkkkkk*nkkkk


Frame B:
---ihsksrsrihyqvnn*rfnsnskgyfiwkgn*ktsrirkn*kkssil*pklffpfr*
eyhiifyycn*sl*cltflcsrsy**smwsfpswllllpmvkqinkrsytirtlmffqii
fclfihlkvvfisffhlnkniqkskify*kkkknkikkk


Frame C:
---FTPNQDPEFIIKLTTEDSIQTARDILSGKETEKLHVLGRIKKNQAFYNPNYSFHLDE
NTISFFTIAIEVCDASLSYVQDHIDEACGAFLPGCFYCPWSSKLTREVTPSEL*cffk*f
fvclfi*klflylffi*trtyknprffikkkkkik*kkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSI387 (SSI387Q) /CSM/SS/SSI3-D/SSI387Q.Seq.d/ 609 e-173
SSM319 (SSM319Q) /CSM/SS/SSM3-A/SSM319Q.Seq.d/ 585 e-166
SSK631 (SSK631Q) /CSM/SS/SSK6-B/SSK631Q.Seq.d/ 585 e-166
SSJ846 (SSJ846Q) /CSM/SS/SSJ8-B/SSJ846Q.Seq.d/ 585 e-166
SSI506 (SSI506Q) /CSM/SS/SSI5-A/SSI506Q.Seq.d/ 585 e-166
SSH286 (SSH286Q) /CSM/SS/SSH2-D/SSH286Q.Seq.d/ 585 e-166
SSF477 (SSF477Q) /CSM/SS/SSF4-D/SSF477Q.Seq.d/ 585 e-166
SSD849 (SSD849Q) /CSM/SS/SSD8-C/SSD849Q.Seq.d/ 585 e-166
SSD158 (SSD158Q) /CSM/SS/SSD1-C/SSD158Q.Seq.d/ 585 e-166
SSB748 (SSB748Q) /CSM/SS/SSB7-B/SSB748Q.Seq.d/ 585 e-166

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF140044|AF140044.1 Dictyostelium discoideum putative calmodulin-binding protein CaM-BP15 mRNA, complete cds. 56 1e-10 3
BQ093452|BQ093452.1 fz47a11.x1 zebrafish fin day1 regeneration Danio rerio cDNA clone 5906204 3' similar to SW:DLX8_BRARE Q98879 HOMEOBOX PROTEIN DLX-8. ;, mRNA sequence. 46 0.39 1
U67846|U67846.1 Danio rerio dlx8 mRNA, complete cds. 46 0.39 1
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence. 46 1.1 4
AC007523|AC007523.1 Homo sapiens chromosome 4, WORKING DRAFT SEQUENCE, 44 unordered pieces. 44 1.6 1
BI025125|BI025125.1 CM4-MT0289-010201-841-d06 MT0289 Homo sapiens cDNA, mRNA sequence. 44 1.6 1
BI030740|BI030740.1 IL5-MT0265-240301-419-d07 MT0265 Homo sapiens cDNA, mRNA sequence. 44 1.6 1
CC589580|CC589580.1 CH240_388B17.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_388B17, genomic survey sequence. 44 1.6 1
AC005840|AC005840.2 Homo sapiens complete sequence of a PAC clone RP1-102E24 containing SYB1, CD27, and SCNN1A genes. 44 1.6 1
AC021990|AC021990.4 Homo sapiens chromosome 4 clone RP11-441O12, WORKING DRAFT SEQUENCE, 26 unordered pieces. 44 1.6 1
dna update 2003. 7.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ... 150 2e-35
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 135 6e-31
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 122 5e-27
CP001618_2965(CP001618|pid:none) Beutenbergia cavernae DSM 12333... 55 1e-06
AC115604_1(AC115604|pid:none) Dictyostelium discoideum chromosom... 42 0.007
BX842651_46(BX842651|pid:none) Bdellovibrio bacteriovorus comple... 36 0.39
CP000502_107(CP000502|pid:none) Pichia stipitis CBS 6054 chromos... 32 5.6
CP000688_969(CP000688|pid:none) Dehalococcoides sp. BAV1, comple... 32 7.3
AJ965256_904(AJ965256|pid:none) Dehalococcoides sp. CBDB1 comple... 32 7.3
CP001034_777(CP001034|pid:none) Natranaerobius thermophilus JW/N... 32 9.5
protein update 2009. 6.13
PSORT

psg: 0.75 gvh: 0.42 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for SSI387 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI387Z
3' end seq.
>SSI387Z.Seq
----------GCATTCACTCCAAATCAAGATCCAGAATTCATTATCAAGTTAACAACTGA
AGATTCAATTCAAACAGCAAGGGATATTTTATCTGGAAAGGAAACTGAAAAACTTCACGT
ATTAGGAAGAATTAAAAAAAATCAAGCATTTTATAACCCAAATTATTCTTTCCATTTAGA
TGAGAATACCATATCATTTTTTACTATTGCAATTGAAGTTTGTGATGCCTCACTTTCTTA
TGTTCAAGATCATATTGATGAAGCATGTGGAGCTTTCCTTCCTGGTTGCTTTTATTGCCC
ATGGTCAAGCAAATTAACAAGAGAAGTTACACCATCAGAACTTTAATGTTTTTTCAAATA
ATTTTTTGTTTGTTTATTCATTTAAAAGTTGTTTTTATATCTTTTTTTCATTTGAACAAG
AACATACAAAAATCCAAGATTTTTTATTAAAAAAAAAAAAAAAATAAAATAAAAAAAAAA
AA
Length of 3' end seq. 472
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -