>SSI374 (SSI374Q) /CSM/SS/SSI3-D/SSI374Q.Seq.d/
XXXXXXXXXXGAAAGACCACTGAGCTCATTAGAAGAATTAAAAGATTTAATTTTGCAAAC
AAAAAATGCTTATTAATTAAATATAGTAAAGATACTAGATATAACGATAACATTGATAAA
TCATTTTTAGTTACCCATGACAAACAAAATTATCAAGCTTTCCCATGTTCAATTTTAGAA
GATGTTAAAGAACAAGCACAAAACTATGATGTAATTGGTATTGATGAAGGCCAATTTTTC
CCAGACGTTGTACAATTTAGTGAAGACTTGGCAAATCAAGGTAAAACCGTTATAATTGCC
GCACTAGATGGTACCTTCCAAAGAAAACCATTCCAATCAGTCATTGATTTAGTATCAAAG
GCTGAATATATTACAAAGTTAACTGCCGTTTGTATGGTTTGCTACAATGAAGCCGCCTTT
TCAAAACGTATCGTCGAAAGTGATGATATCGAATTAATTGGTGGTATAGATAAATATATT
TCCGTTTGCCGTGGTTGCTACAATAGTGATCAAAATGAAGGAAATAGTACCAAACCAAGC
AAAACCGCACGTCATTCTCATTCTCAAAGCGCACCATCCGTTGCTCCACTTGCTGTAACC
ATTAATCCTGATGATCATTTAAATAATGATTATTAATTATGAAGATCCTAATTATATTTG
TACATTATAAATTATAATC

---KTTELIRRIKRFNFANKKCLLIKYSKDTRYNDNIDKSFLVTHDKQNYQAFPCSILED
VKEQAQNYDVIGIDEGQFFPDVVQFSEDLANQGKTVIIAALDGTFQRKPFQSVIDLVSKA
EYITKLTAVCMVCYNEAAFSKRIVESDDIELIGGIDKYISVCRGCYNSDQNEGNSTKPSK
TARHSHSQSAPSVAPLAVTINPDDHLNNDY*l*rs*lylyiinyn

Frame A:
---kdh*ah*kn*ki*fckqkmlin*i**ry*i*r*h**iifsyp*qtklssfpmfnfrr
c*rtstkl*cnwy**rpifprrcti**rlgksr*nryncrtrwylpkktipish*fsikg
*iyykvncrlygllq*srlfktyrrk**yrinwwyr*iyfrlpwllq**sk*rk*yqtkq
nrtsfsfskrtircstccnh*s**sfk**llimkiliifvhykl*


Frame B:
---KTTELIRRIKRFNFANKKCLLIKYSKDTRYNDNIDKSFLVTHDKQNYQAFPCSILED
VKEQAQNYDVIGIDEGQFFPDVVQFSEDLANQGKTVIIAALDGTFQRKPFQSVIDLVSKA
EYITKLTAVCMVCYNEAAFSKRIVESDDIELIGGIDKYISVCRGCYNSDQNEGNSTKPSK
TARHSHSQSAPSVAPLAVTINPDDHLNNDY*l*rs*lylyiinyn


Frame C:
---rplssleelkdlilqtknay*lnivkildititlinhf*lpmtnkiiklshvqf*km
lknkhktmm*lvlmkanfsqtlynlvktwqikvkpl*lph*mvpskenhsnqsli*yqrl
nilqs*lpfvwfatmkppfqnvsskvmisn*lvv*inifpfavvativikmkeivpnqak
phvililkahhpllhll*plilmii*imiinyedpnyictl*iii

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI374 (SSI374Q) /CSM/SS/SSI3-D/SSI374Q.Seq.d/                       1326   0.0
SLH838 (SLH838Q) /CSM/SL/SLH8-B/SLH838Q.Seq.d/                       1312   0.0
SSC346 (SSC346Q) /CSM/SS/SSC3-B/SSC346Q.Seq.d/                       1310   0.0
SSC741 (SSC741Q) /CSM/SS/SSC7-B/SSC741Q.Seq.d/                       1296   0.0
SSF620 (SSF620Q) /CSM/SS/SSF6-A/SSF620Q.Seq.d/                       1287   0.0
VHQ109 (VHQ109Q) /CSM/VH/VHQ1-A/VHQ109Q.Seq.d/                       1195   0.0
VSJ693 (VSJ693Q) /CSM/VS/VSJ6-D/VSJ693Q.Seq.d/                       1166   0.0
VSI601 (VSI601Q) /CSM/VS/VSI6-A/VSI601Q.Seq.d/                       1152   0.0
SSD279 (SSD279Q) /CSM/SS/SSD2-D/SSD279Q.Seq.d/                       1148   0.0
SSA406 (SSA406Q) /CSM/SS/SSA4-A/SSA406Q.Seq.d/                       1148   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF510846|AF510846.1 Dictyostelium discoideum calmodulin-binding protein ThyB (thyB) mRNA, complete cds.  1318  0.0  1
U61990|U61990.1 Dictyostelium discoideum ThyB (thyB) mRNA, complete cds.  1263  0.0  1
CB888459|CB888459.1 taa92g08.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:KITH_CHICK P04047 THYMIDINE KINASE, CYTOSOLIC ;, mRNA sequence.    56  3e-06  2
AZ692494|AZ692494.1 ENTJU18TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48  0.003  2
CB823884|CB823884.1 EST 5108 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh002g05 3', mRNA sequence.    50  0.036  1
CB823537|CB823537.1 EST 4761 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh006p21 3', mRNA sequence.    50  0.036  1
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34  0.11  7
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.        32  0.29  11
BX004808|BX004808.5 Zebrafish DNA sequence from clone CH211-51B23 in linkage group 16.    36  0.43  5
BQ940162|BQ940162.1 AGENCOURT_8841687 Lupski_sciatic_nerve Homo sapiens cDNA clone IMAGE:6199221 5', mRNA sequence.    46  0.56  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04183) RecName: Full=Thymidine kinase, cytosolic;          EC=...   196   7e-49
AY335565_1(AY335565|pid:none) Synthetic construct Homo sapiens t...   196   7e-49
AM905441_1(AM905441|pid:none) Suberites domuncula mRNA for thymi...   195   9e-49
BT030694_1(BT030694|pid:none) Bos taurus thymidine kinase 1, sol...   195   1e-48
K02581_1(K02581|pid:none) Human thymidine kinase mRNA, complete ...   194   2e-48
AB451268_1(AB451268|pid:none) Homo sapiens TK1 mRNA for thymidin...   194   2e-48
BC091758_1(BC091758|pid:none) Mus musculus thymidine kinase 1, m...   193   4e-48
(P04184) RecName: Full=Thymidine kinase, cytosolic;          EC=...   193   4e-48
(P09768) RecName: Full=Thymidine kinase, cytosolic;          EC=...   192   6e-48
M11945_1(M11945|pid:none) Mouse cytosolic thymidine kinase mRNA ...   192   8e-48

 psg: 0.59  gvh: 0.25  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal

>> prediction for SSI374 is nuc

>SSI374Z.Seq
----------GAAAGACCACTGAGCTCATTAGAAGAATTAAAAGATTTAATTTTGCAAAC
AAAAAATGCTTATTAATTAAATATAGTAAAGATACTAGATATAACGATAACATTGATAAA
TCATTTTTAGTTACCCATGACAAACAAAATTATCAAGCTTTCCCATGTTCAATTTTAGAA
GATGTTAAAGAACAAGCACAAAACTATGATGTAATTGGTATTGATGAAGGCCAATTTTTC
CCAGACGTTGTACAATTTAGTGAAGACTTGGCAAATCAAGGTAAAACCGTTATAATTGCC
GCACTAGATGGTACCTTCCAAAGAAAACCATTCCAATCAGTCATTGATTTAGTATCAAAG
GCTGAATATATTACAAAGTTAACTGCCGTTTGTATGGTTTGCTACAATGAAGCCGCCTTT
TCAAAACGTATCGTCGAAAGTGATGATATCGAATTAATTGGTGGTATAGATAAATATATT
TCCGTTTGCCGTGGTTGCTACAATAGTGATCAAAATGAAGGAAATAGTACCAAACCAAGC
AAAACCGCACGTCATTCTCATTCTCAAAGCGCACCATCCGTTGCTCCACTTGCTGTAACC
ATTAATCCTGATGATCATTTAAATAATGATTATTAATTATGAAGATCCTAATTATATTTG
TACATTATAAATTATAATC