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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI367
Library SS
(Link to library)
Clone ID SSI367
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16341-1
Original site URL
Representative seq. ID SSI367E
(Link to Original site)
Representative DNA sequence 
>SSI367 (SSI367Q) /CSM/SS/SSI3-C/SSI367Q.Seq.d/
AGAGAATTATATTATCACTTCCATTCTTAAAGGAACTTGTAGCCCAATTAAAGTCAATGA
CACTGAGGCTTGGACTTATTCAACTTGTGATGAAAATTCTATGCTAAGCTATATTTGTAG
TGAACCAACTTGTTTCATTGGTAACTGTTATGCCATTCCAAATGTTTACAAAAATAGTAC
TCAATGTGTTCCAGGTCGTGATCTTGACGGTAATATTGCAGATGGTATCTATTATAAATT
TGTTCCAAAATTAAAAAGTCAACCAAAACCATCTTCACCAACCCCATCTCAAACCAGTAC
TCCAATTTCAGAAGATGAAGACCCAAATCATTCTTCAAAAGTTTTTGCCTCAATTGCTTT
AATTATTTTTGGTTTATTATTATCATCTCTTTAAGTTTATAAAAAAGTAAAAAAAAAAAA
AAAAAAAA
sequence update 1998. 1.18
Translated Amino Acid sequence 
ENYIITSILKGTCSPIKVNDTEAWTYSTCDENSMLSYICSEPTCFIGNCYAIPNVYKNST
QCVPGRDLDGNIADGIYYKFVPKLKSQPKPSSPTPSQTSTPISEDEDPNHSSKVFASIAL
IIFGLLLSSL*vykkvkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
relyyhfhs*rnl*pn*sq*h*gldlfnl**kfyaklyl**tnlfhw*llchskclqk*y
smcsrs*s*r*ycrwyll*icskikkstktiftnpisnqysnfrr*rpksffksfclncf
nyfwfiiiislsl*kskkkkkk


Frame B:
ENYIITSILKGTCSPIKVNDTEAWTYSTCDENSMLSYICSEPTCFIGNCYAIPNVYKNST
QCVPGRDLDGNIADGIYYKFVPKLKSQPKPSSPTPSQTSTPISEDEDPNHSSKVFASIAL
IIFGLLLSSL*vykkvkkkkkk


Frame C:
riilslpflkelvaqlksmtlrlgliqlvmkilc*aifvvnqlvslvtvmpfqmftkivl
nvfqvviltvilqmvsiinlfqn*kvnqnhlhqphlkpvlqfqkmktqiilqkflpqll*
lflvyyyhlfkfikk*kkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM887 (SSM887Q) /CSM/SS/SSM8-D/SSM887Q.Seq.d/                        793   0.0
SSM401 (SSM401Q) /CSM/SS/SSM4-A/SSM401Q.Seq.d/                        793   0.0
SSM368 (SSM368Q) /CSM/SS/SSM3-C/SSM368Q.Seq.d/                        793   0.0
SSJ752 (SSJ752Q) /CSM/SS/SSJ7-C/SSJ752Q.Seq.d/                        793   0.0
SSJ433 (SSJ433Q) /CSM/SS/SSJ4-B/SSJ433Q.Seq.d/                        793   0.0
SSJ110 (SSJ110Q) /CSM/SS/SSJ1-A/SSJ110Q.Seq.d/                        793   0.0
SSJ102 (SSJ102Q) /CSM/SS/SSJ1-A/SSJ102Q.Seq.d/                        793   0.0
SSI367 (SSI367Q) /CSM/SS/SSI3-C/SSI367Q.Seq.d/                        793   0.0
SSH892 (SSH892Q) /CSM/SS/SSH8-D/SSH892Q.Seq.d/                        793   0.0
SSH569 (SSH569Q) /CSM/SS/SSH5-C/SSH569Q.Seq.d/                        793   0.0
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   793  0.0  1
BX005430|BX005430.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-19E4.    48  0.088  1
BX571716|BX571716.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-148L14.    48  0.088  1
BZ449840|BZ449840.1 BONHM21TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONHM21, DNA sequence.    48  0.088  1
AC012075|AC012075.10 Homo sapiens clone RP11-492P1, complete sequence.    40  0.33  4
X54421|X54421.1 Schizosaccharomyces pombe complete mitochondrial genome.    46  0.35  1
AZ850991|AZ850991.1 2M0153L08F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC2M0153L08 F, DNA sequence.    46  0.35  1
X02819|X02819.1 Fission yeast cob gene for cytochrome b.          46  0.35  1
AC093412|AC093412.3 Homo sapiens chromosome 3 clone RP11-11L6, complete sequence.    38  1.2  3
AC080021|AC080021.3 Genomic sequence for Mus musculus, clone RP23-422L7, complete sequence.    44  1.4  1
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_86(AC116305|pid:none) Dictyostelium discoideum chromoso...   192   3e-48
CP000609_1249(CP000609|pid:none) Methanococcus maripaludis C5, c...    34   1.8
AJ235273_42(AJ235273|pid:none) Rickettsia prowazekii strain Madr...    33   3.1
CP001083_1828(CP001083|pid:none) Clostridium botulinum Ba4 str. ...    32   7.0
AP006716_1267(AP006716|pid:none) Staphylococcus haemolyticus JCS...    32   9.2
CP000817_4564(CP000817|pid:none) Lysinibacillus sphaericus C3-41...    32   9.2
protein update 2009. 7. 8
PSORT 

 psg: 0.77  gvh: 0.43  alm: 0.21  top: 0.70  tms: 0.07  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SSI367 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSI367E
Full length Seq. 
>SSI367E.Seq
AGAGAATTATATTATCACTTCCATTCTTAAAGGAACTTGTAGCCCAATTAAAGTCAATGA
CACTGAGGCTTGGACTTATTCAACTTGTGATGAAAATTCTATGCTAAGCTATATTTGTAG
TGAACCAACTTGTTTCATTGGTAACTGTTATGCCATTCCAAATGTTTACAAAAATAGTAC
TCAATGTGTTCCAGGTCGTGATCTTGACGGTAATATTGCAGATGGTATCTATTATAAATT
TGTTCCAAAATTAAAAAGTCAACCAAAACCATCTTCACCAACCCCATCTCAAACCAGTAC
TCCAATTTCAGAAGATGAAGACCCAAATCATTCTTCAAAAGTTTTTGCCTCAATTGCTTT
AATTATTTTTGGTTTATTATTATCATCTCTTTAAGTTTATAAAAAAGTAAAAAAAAAAAA
AAAAAAAA
Length of full length seq. 428