>SSI366 (SSI366Q) /CSM/SS/SSI3-C/SSI366Q.Seq.d/
XXXXXXXXXXCTTTATATAAAGCTTATTTAGAAGATTTTTACAACTATTGCAAATATCTC
GGTGGTCAAACTGAATTGATCATGAGTGATATTTTAAAGTTTGAAGCAGATCGTAGATCA
ATCAATATCACAATCAATAGTTTTGGTGCAACTGAACTCTCAAAGGATGATCGTGAAAAA
CTTTACCCATCCTTAGGTCTTTTATACCCAGAAGGTACTAGCAAACTTGGTAAAGCTGAA
GACGTTGATCAAGTTAGAGGTATCCTCGAAGTTTACTCTACCTATCGTAATTTCTTCTCT
GATGGTGTCAACAACGAGAAATCATTGGAAGACTCATTCTTTGAACATGAAGTTCACTTA
AATCGTATGGCTTTTGAAGATCAATATGGTTATGGTGTCTTTTACGCTTACATTAAATTA
AGAGAACAAGAAATTAGAAATATAGTTTGGATTGCTGAATGTATTAGTCAAAATATGAAA
CAAAAAATGAATCAATACATTCCAATCTTTTAAAAAAATAACTATATCTAATTATTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA

---LYKAYLEDFYNYCKYLGGQTELIMSDILKFEADRRSINITINSFGATELSKDDREKL
YPSLGLLYPEGTSKLGKAEDVDQVRGILEVYSTYRNFFSDGVNNEKSLEDSFFEHEVHLN
RMAFEDQYGYGVFYAYIKLREQEIRNIVWIAECISQNMKQKMNQYIPIF*knnyi*llkk
kkkkkkkk

Frame A:
---fi*slfrrflqllqisrwsn*idhe*yfkv*srs*inqyhnq*fwcn*tlkg*s*kt
lpilrsfiprry*qtw*s*rr*ss*ryprsllyls*fll*wcqqreiigrlil*t*sslk
sygf*rsiwlwcllrlh*ikrtrn*kysldc*my*skyetknesihsnllkk*lyliikk
kkkkkkkk


Frame B:
---LYKAYLEDFYNYCKYLGGQTELIMSDILKFEADRRSINITINSFGATELSKDDREKL
YPSLGLLYPEGTSKLGKAEDVDQVRGILEVYSTYRNFFSDGVNNEKSLEDSFFEHEVHLN
RMAFEDQYGYGVFYAYIKLREQEIRNIVWIAECISQNMKQKMNQYIPIF*knnyi*llkk
kkkkkkkk


Frame C:
---yikli*kifttianisvvkln*s*vif*slkqivdqsisqsivlvqlnsqrmivknf
thp*vfytqkvlanlvklktliklevsskftlpivisslmvsttrnhwkthslnmkft*i
vwllkinmvmvsftltln*enkklei*fgllnvlvki*nkk*intfqsfkkitisny*kk
kkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA730 (VSA730Q) /CSM/VS/VSA7-B/VSA730Q.Seq.d/                       1043   0.0
SSK753 (SSK753Q) /CSM/SS/SSK7-C/SSK753Q.Seq.d/                       1043   0.0
SSK721 (SSK721Q) /CSM/SS/SSK7-A/SSK721Q.Seq.d/                       1043   0.0
SSI366 (SSI366Q) /CSM/SS/SSI3-C/SSI366Q.Seq.d/                       1043   0.0
SSI279 (SSI279Q) /CSM/SS/SSI2-D/SSI279Q.Seq.d/                       1043   0.0
SSG826 (SSG826Q) /CSM/SS/SSG8-B/SSG826Q.Seq.d/                       1043   0.0
SSG660 (SSG660Q) /CSM/SS/SSG6-C/SSG660Q.Seq.d/                       1043   0.0
SSF396 (SSF396Q) /CSM/SS/SSF3-D/SSF396Q.Seq.d/                       1043   0.0
SSC867 (SSC867Q) /CSM/SS/SSC8-C/SSC867Q.Seq.d/                       1043   0.0
FC-BS06 (FC-BS06Q) /CSM/FC/FC-BS/FC-BS06Q.Seq.d/                     1043   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.  1043  0.0  1
U13150|U13150.1 Dictyostelium discoideum vacuolar ATPase subunit DVA41 mRNA, complete cds.  1027  0.0  1
BE029219|BE029219.1 kp26d05.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:VATX_BOVIN P12953 VACUOLAR ATP SYNTHASE SUBUNIT AC39 ;, mRNA sequence.    76  4e-14  2
AI067953|AI067953.1 EST209642 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCH20 5' end similar to ATPase vacuolar, 40 kDa subunit, mRNA sequence.    54  0.002  1
AI067936|AI067936.1 EST209624 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCG92 5' end similar to ATPase vacuolar, 40 kDa subunit, mRNA sequence.    54  0.002  1
BU776849|BU776849.1 SJEDDD08 SJE Schistosoma japonicum cDNA, mRNA sequence.    54  0.002  1
AI067312|AI067312.1 EST208990 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNAS44 5' end similar to ATPase vacuolar, 40 kDa subunit, mRNA sequence.    54  0.002  1
BU768904|BU768904.1 SJEBZB10 SJE Schistosoma japonicum cDNA, mRNA sequence.    54  0.002  1
AI067329|AI067329.1 EST209007 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNAS63 5' end similar to ATPase vacuolar, 40 kDa subunit, mRNA sequence.    54  0.002  1
BE580863|BE580863.1 kp82d12.y2 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to TR:Q25531 Q25531 40-KDA V-ATPASE SUBUNIT. ;, mRNA sequence.    34  0.021  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A55016(A55016) lysosomal membrane protein DVA41 - slime mold (Di...   340   2e-92
(P54641) RecName: Full=V-type proton ATPase subunit d;          ...   340   2e-92
(Q5ZHL0) RecName: Full=V-type proton ATPase subunit d 2;        ...   205   8e-52
BT081086_1(BT081086|pid:none) Caligus clemensi clone ccle-evs-51...   204   1e-51
BT077935_1(BT077935|pid:none) Lepeophtheirus salmonis clone lsal...   204   1e-51
(Q9W4P5) RecName: Full=V-type proton ATPase subunit d 1;        ...   203   2e-51
AC006611_1(AC006611|pid:none) Caenorhabditis elegans cosmid C30F...   202   5e-51
BC042233_1(BC042233|pid:none) Xenopus laevis ATPase, H+ transpor...   200   2e-50
BC125665_1(BC125665|pid:none) Xenopus tropicalis ATPase, H+ tran...   199   6e-50
(P51863) RecName: Full=V-type proton ATPase subunit d 1;        ...   198   9e-50

 psg: 0.75  gvh: 0.29  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSI366 is cyt

>SSI366Z.Seq
----------CTTTATATAAAGCTTATTTAGAAGATTTTTACAACTATTGCAAATATCTC
GGTGGTCAAACTGAATTGATCATGAGTGATATTTTAAAGTTTGAAGCAGATCGTAGATCA
ATCAATATCACAATCAATAGTTTTGGTGCAACTGAACTCTCAAAGGATGATCGTGAAAAA
CTTTACCCATCCTTAGGTCTTTTATACCCAGAAGGTACTAGCAAACTTGGTAAAGCTGAA
GACGTTGATCAAGTTAGAGGTATCCTCGAAGTTTACTCTACCTATCGTAATTTCTTCTCT
GATGGTGTCAACAACGAGAAATCATTGGAAGACTCATTCTTTGAACATGAAGTTCACTTA
AATCGTATGGCTTTTGAAGATCAATATGGTTATGGTGTCTTTTACGCTTACATTAAATTA
AGAGAACAAGAAATTAGAAATATAGTTTGGATTGCTGAATGTATTAGTCAAAATATGAAA
CAAAAAATGAATCAATACATTCCAATCTTTTAAAAAAATAACTATATCTAATTATTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA