>SSI361 (SSI361Q) /CSM/SS/SSI3-C/SSI361Q.Seq.d/
TTTTTTTTTTATTACATCAATCCTCAATTTTTTTCAAATCAAATATAAATATATACATAT
ATAATCAACAATGAGTTCAGCACAATCAAGAGGTGGTAAGACAGGTGGTAAAGTTGGTGG
TAAAGTTGGTGCCAAACGTCATAAGAAAACTCAAAAGGAACACATCAATGGTATTACTAA
GCCAGCCATCCGTCGTTTAGCTCGTAGAGGTGGTGTCAAGCGTATCTCTTTCCCAATCTA
TGAAGAAACTAGAAATGTATTACGTACCTTCTTAACCAATGTTATTCGTGATTCCGTTGC
CTACACTGAACATGCTGGTCGTCGTACTGTTACTGCTATGGATGTTGTATATGCTCTCAA
GAGACAAGGTAGAACTTTATATGGTTTTAACTCTTAAACTCAAAATCATTTAAAA

fffitsilnffqikykyihi*STMSSAQSRGGKTGGKVGGKVGAKRHKKTQKEHINGITK
PAIRRLARRGGVKRISFPIYEETRNVLRTFLTNVIRDSVAYTEHAGRRTVTAMDVVYALK
RQGRTLYGFNS*tqnhlk

Frame A:
fffyyinpqffsnqi*iytyiinnefstikrw*drw*sww*swcqts*enskgthqwyy*
ashpsfss*rwcqaylfpnl*rn*kcityllnqcys*frclh*tcwssycycygccicsq
etr*nfiwf*llnsksfk


Frame B:
fffitsilnffqikykyihi*STMSSAQSRGGKTGGKVGGKVGAKRHKKTQKEHINGITK
PAIRRLARRGGVKRISFPIYEETRNVLRTFLTNVIRDSVAYTEHAGRRTVTAMDVVYALK
RQGRTLYGFNS*tqnhlk


Frame C:
ffllhqssiffksniniyiynqq*vqhnqevvrqvvklvvklvpnvirklkrntsmvlls
qpsvv*lvevvssvslsqsmkklemyyvps*pmlfviplptlnmlvvvllllwmlymlsr
dkvelymvltlklkii*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH837 (VSH837Q) /CSM/VS/VSH8-B/VSH837Q.Seq.d/                        698   0.0
VSF492 (VSF492Q) /CSM/VS/VSF4-D/VSF492Q.Seq.d/                        698   0.0
VSA569 (VSA569Q) /CSM/VS/VSA5-C/VSA569Q.Seq.d/                        698   0.0
SSI362 (SSI362Q) /CSM/SS/SSI3-C/SSI362Q.Seq.d/                        698   0.0
SSI361 (SSI361Q) /CSM/SS/SSI3-C/SSI361Q.Seq.d/                        698   0.0
SSF336 (SSF336Q) /CSM/SS/SSF3-B/SSF336Q.Seq.d/                        698   0.0
SSE664 (SSE664Q) /CSM/SS/SSE6-C/SSE664Q.Seq.d/                        698   0.0
SSD208 (SSD208Q) /CSM/SS/SSD2-A/SSD208Q.Seq.d/                        698   0.0
SSK287 (SSK287Q) /CSM/SS/SSK2-D/SSK287Q.Seq.d/                        696   0.0
SSH176 (SSH176Q) /CSM/SS/SSH1-D/SSH176Q.Seq.d/                        692   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115576|AC115576.1 Dictyostelium discoideum chromosome 2 map 5868742-5900083 strain AX4, *** SEQUENCING IN PROGRESS ***.   698  0.0  2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   698  0.0  2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.   533  e-145  2
BI743034|BI743034.1 kx37h12.y1 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:H4_CAEEL P02306 HISTONE H4. [1] ;, mRNA sequence.    82  7e-24  2
X00725|X00725.1 Yeast genes for histone H3 and H4 (copy-II genes from plasmids  PMS201 and PMS202).    76  6e-22  3
AX595962|AX595962.1 Sequence 1616 from Patent EP1258494.          68  4e-21  3
AB102686|AB102686.1 Silene latifolia SlH4 mRNA for histone H4, complete cds.    84  9e-21  2
AX536436|AX536436.1 Sequence 37 from Patent WO02064766.           68  3e-20  3
BM065855|BM065855.1 KS07008B10 KS07 Capsicum annuum cDNA, mRNA sequence.    56  8e-20  3
X00724|X00724.1 Yeast genes for histone H3 and H4 (copy-I genes from PMS191).    68  1e-19  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S14185(S14185)histone H4 (clone H4g) - Stylonychia lemnae             132   4e-30
(P50566) RecName: Full=Histone H4;  &L41841_2(L41841|pid:none) &...   130   1e-29
S10076(S10076) histone H4.2 - slime mold (Physarum polycephalum)...   130   1e-29
(Q9U7D0) RecName: Full=Histone H4;  &AF140034_1(AF140034|pid:none)    129   4e-29
(P35057) RecName: Full=Histone H4;  &(Q6V9I2) RecName: Fu &(Q71V...   128   5e-29
(P40287) RecName: Full=Histone H4;  &L35898_1(L35898|pid:none) &...   128   5e-29
(Q43083) RecName: Full=Histone H4;  &X77806_1(X77806|pid:none)        128   7e-29
X98016_2(X98016|pid:none) T.vaginalis DNA for histone H4-2 and h...   128   7e-29
EZ000576_1(EZ000576|pid:none) TSA: Culex tarsalis Ctar-575 histo...   127   9e-29
BC128105_1(BC128105|pid:none) Homo sapiens histone cluster 2, H4...   127   9e-29

 psg: 0.65  gvh: 0.31  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.10
 nuc: 0.17  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.12  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SSI361 is nuc

>SSI361E.Seq
TTTTTTTTTTATTACATCAATCCTCAATTTTTTTCAAATCAAATATAAATATATACATAT
ATAATCAACAATGAGTTCAGCACAATCAAGAGGTGGTAAGACAGGTGGTAAAGTTGGTGG
TAAAGTTGGTGCCAAACGTCATAAGAAAACTCAAAAGGAACACATCAATGGTATTACTAA
GCCAGCCATCCGTCGTTTAGCTCGTAGAGGTGGTGTCAAGCGTATCTCTTTCCCAATCTA
TGAAGAAACTAGAAATGTATTACGTACCTTCTTAACCAATGTTATTCGTGATTCCGTTGC
CTACACTGAACATGCTGGTCGTCGTACTGTTACTGCTATGGATGTTGTATATGCTCTCAA
GAGACAAGGTAGAACTTTATATGGTTTTAACTCTTAAACTCAAAATCATTTAAAA