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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI354
Library SS
(Link to library)
Clone ID SSI354
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13424-1|Contig-U16394-1
Original site URL
Representative seq. ID SSI354P
(Link to Original site)
Representative DNA sequence 
>SSI354 (SSI354Q) /CSM/SS/SSI3-C/SSI354Q.Seq.d/
CATCACAGCTAACCTAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAAAAATAATAATAATAATAATAATAAACCAACTAC
ACCAACATTTGTACCATCTTCACCAAGTCAATATAGTACAATTAATAAAAGTACAATTAT
AAATAATAATACATTTATACGTAGAAATAGTTCAATGTCACAATTAAATAATAGTGGTGG
TGGTAATGTTAATGGTAATAATAATAATAATAATAATAATAATAATAATAATAATATTAA
TATTAATAATAGTGGAGTTGGTGGTAGAAGAAATAGTGTTATGGATTTACAAAATAAACT
TTTAAATCAATGTGATGAATCAGAATCAAATAAATTAGTAAAGAGAGTTTGGTCAGTTTT
AAATTTAACATCAATTTCAAATTCAGGTGGTGGTGATGAATCAGATGATGATGATGAAGA
AGCAGAGAGAAATCAAAGATCTTTAACACCAATTATTGTACCACAATTAATTGATGGTGG
TCTTTCAAATCATCCAATACTAAATCAXXXXXXXXXXTTCAATTGGGTACAGGTGTTGAA
TGTTTTCAAAAAGCAGTTGCAGCACTCAAACAATGGAAACACTTTGATTTAGATTGGGTA
GATTTTTACTTTAAAAATACACCTATTGCAGTGGGTGAAACCGTTGGAATCTTGTCAAAG
CAAGTTGGTTTTTGGATTCTATCATTTGCTCGTATCAATTATCTTTACGATGGTGATCAA
GAAGATGGTTCAATTAAATTTGGTTATTCATATGGTACACTAAAGGATCATGTTGAAAAA
GGTGAAGAAAGATTCGTCATTGAATGGGTACGTGATCCTGATGGTGCCCCTGACAAAGGT
GCTGTTTATTATGAAATGTTATCCTTTTCAGAACCAAGCTATTGGTTATCTCAATTGGGT
TATCCTGTAACTCGTTACTTTCAAAATAAATTTGTTGTTGATTCATGTAATCAAATGTTA
AAAGCAGTGGGTTCAAATCAAAATGTTAGACATGTATAATTAAGTATTATTAAAATAATA
ATAAAATAAATAAATAAAAAAAAATAAAATAAAATAAATTATAAATTTATTAAAAAT
sequence update 1998.11.10
Translated Amino Acid sequence 
ITANLNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNKPTTPTFVPSSPSQYSTINKSTII
NNNTFIRRNSSMSQLNNSGGGNVNGNNNNNNNNNNNNNININNSGVGGRRNSVMDLQNKL
LNQCDESESNKLVKRVWSVLNLTSISNSGGGDESDDDDEEAERNQRSLTPIIVPQLIDGG
LSNHPILN---

---QLGTGVECFQKAVAALKQWKHFDLDWVDFYFKNTPIAVGETVGILSKQVGFWILSFA
RINYLYDGDQEDGSIKFGYSYGTLKDHVEKGEERFVIEWVRDPDGAPDKGAVYYEMLSFS
EPSYWLSQLGYPVTRYFQNKFVVDSCNQMLKAVGSNQNVRHV*lsiikiiik*inkkk*n
kinykfikn
Translated Amino Acid sequence (All Frames) 
Frame A:
hhs*pk***********************k*******tnytnictiftksi*yn**kyny
k**yiyt*k*fnvtik**www*c*w*************y*y***wsww*kk*cygftk*t
fksm**irik*iskeslvsfkfninfkfrww**ir****rsrekskifntnycttin*ww
sfkssntks---

---fnwvqvlnvfkkqlqhsnngntli*ig*iftlkihllqwvkplescqsklvfgfyhl
lvsiiftmvikkmvqlnlvihmvh*rimlkkvkkdsslngyvilmvpltkvlfimkcypf
qnqaigylnwvil*lvtfkinlllihvikc*kqwvqikmldmyn*vllk***nk*ikknk
ik*iinllk

Frame B:
ITANLNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNKPTTPTFVPSSPSQYSTINKSTII
NNNTFIRRNSSMSQLNNSGGGNVNGNNNNNNNNNNNNNININNSGVGGRRNSVMDLQNKL
LNQCDESESNKLVKRVWSVLNLTSISNSGGGDESDDDDEEAERNQRSLTPIIVPQLIDGG
LSNHPILN---

---sigyrc*mfsksscstqtmetl*frlgrfll*kytycsg*nrwnlvkaswfldsiic
syqlslrw*srrwfn*iwlfiwytkgsc*kr*rkirh*mgt*s*wcp*qrccll*nvilf
rtkllvisiglscnsllsk*icc*fm*snvkssgfkskc*tciikyy*nnnkink*kkik
*nkl*iy*k

Frame C:
sqlt*iiiiiiiiiiiiiiiiiiiiiiikiiiiiiinqlhqhlyhlhqvnivqlikvql*
iiihlyveivqchn*iivvvvmlmviiiiiiiiiiiiililiivelvveeivlwiykinf
*invmnqnqin**refgqf*i*hqfqiqvvvmnqmmmmkkqreikdl*hqllyhn*lmvv
fqiiqy*i---

---QLGTGVECFQKAVAALKQWKHFDLDWVDFYFKNTPIAVGETVGILSKQVGFWILSFA
RINYLYDGDQEDGSIKFGYSYGTLKDHVEKGEERFVIEWVRDPDGAPDKGAVYYEMLSFS
EPSYWLSQLGYPVTRYFQNKFVVDSCNQMLKAVGSNQNVRHV*lsiikiiik*inkkk*n
kinykfikn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI354 (SSI354Q) /CSM/SS/SSI3-C/SSI354Q.Seq.d/                       1445   0.0
SSA248 (SSA248Q) /CSM/SS/SSA2-B/SSA248Q.Seq.d/                        833   0.0
SSI353 (SSI353Q) /CSM/SS/SSI3-C/SSI353Q.Seq.d/                        256   7e-67
VHJ180 (VHJ180Q) /CSM/VH/VHJ1-D/VHJ180Q.Seq.d/                         44   0.005
VSI828 (VSI828Q) /CSM/VS/VSI8-B/VSI828Q.Seq.d/                         42   0.018
VSH793 (VSH793Q) /CSM/VS/VSH7-D/VSH793Q.Seq.d/                         42   0.018
VHP259 (VHP259Q) /CSM/VH/VHP2-C/VHP259Q.Seq.d/                         42   0.018
VHL194 (VHL194Q) /CSM/VH/VHL1-D/VHL194Q.Seq.d/                         42   0.018
VHI244 (VHI244Q) /CSM/VH/VHI2-B/VHI244Q.Seq.d/                         42   0.018
VHC203 (VHC203Q) /CSM/VH/VHC2-A/VHC203Q.Seq.d/                         42   0.018
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115594|AC115594.2 Dictyostelium discoideum chromosome 2 map 4071862-4101005 strain AX4, complete sequence.   971  0.0  3
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38  0.002  12
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    42  0.003  9
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    36  0.007  10
AC115608|AC115608.2 Dictyostelium discoideum chromosome 2 map 6061442-6097630 strain AX4, complete sequence.    36  0.017  6
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    42  0.021  11
AC118480|AC118480.3 Homo sapiens BAC clone RP11-393K13 from 4, complete sequence.    44  0.056  2
AL086340|AL086340.1 Arabidopsis thaliana genome survey sequence SP6 end of BAC F12G24 of IGF library from strain Columbia of Arabidopsis thaliana.    50  0.061  1
BT002832|0    50  0.061  1
CC885273|CC885273.1 SALK_146799.56.00.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_146799.56.00.x, genomic survey sequence.    50  0.061  1
dna update 2003. 8. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM746676_917(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ...   102   2e-20
AC150705_19(AC150705|pid:none) Medicago truncatula clone mth2-13...    93   1e-17
BX294137_316(BX294137|pid:none) Rhodopirellula baltica SH 1 comp...    93   2e-17
BT052408_1(BT052408|pid:none) Medicago truncatula clone MTYFD_FE...    92   3e-17
CP000589_58(CP000589|pid:none) Ostreococcus lucimarinus CCE9901 ...    89   3e-16
CR954209_54(CR954209|pid:none) Ostreococcus tauri strain OTTH059...    87   8e-16
AK071651_1(AK071651|pid:none) Oryza sativa Japonica Group cDNA c...    82   3e-14
AK101392_1(AK101392|pid:none) Oryza sativa Japonica Group cDNA c...    82   3e-14
AC113930_4(AC113930|pid:none) Oryza sativa (japonica cultivar-gr...    82   3e-14
CR855034_6(CR855034|pid:none) Oryza sativa (indica cultivar-grou...    81   8e-14
protein update 2009. 6.13
PSORT 

 psg: 0.65  gvh: 0.30  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.51  mip: 0.18
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: nuclear

>> prediction for SSI354 is mit
5' end seq. ID SSI354F
5' end seq. 
>SSI354F.Seq
CATCACAGCTAACCTAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAAAAATAATAATAATAATAATAATAAACCAACTAC
ACCAACATTTGTACCATCTTCACCAAGTCAATATAGTACAATTAATAAAAGTACAATTAT
AAATAATAATACATTTATACGTAGAAATAGTTCAATGTCACAATTAAATAATAGTGGTGG
TGGTAATGTTAATGGTAATAATAATAATAATAATAATAATAATAATAATAATAATATTAA
TATTAATAATAGTGGAGTTGGTGGTAGAAGAAATAGTGTTATGGATTTACAAAATAAACT
TTTAAATCAATGTGATGAATCAGAATCAAATAAATTAGTAAAGAGAGTTTGGTCAGTTTT
AAATTTAACATCAATTTCAAATTCAGGTGGTGGTGATGAATCAGATGATGATGATGAAGA
AGCAGAGAGAAATCAAAGATCTTTAACACCAATTATTGTACCACAATTAATTGATGGTGG
TCTTTCAAATCATCCAATACTAAATCA----------
Length of 5' end seq. 567
3' end seq. ID SSI354Z
3' end seq. 
>SSI354Z.Seq
----------TTCAATTGGGTACAGGTGTTGAATGTTTTCAAAAAGCAGTTGCAGCACTC
AAACAATGGAAACACTTTGATTTAGATTGGGTAGATTTTTACTTTAAAAATACACCTATT
GCAGTGGGTGAAACCGTTGGAATCTTGTCAAAGCAAGTTGGTTTTTGGATTCTATCATTT
GCTCGTATCAATTATCTTTACGATGGTGATCAAGAAGATGGTTCAATTAAATTTGGTTAT
TCATATGGTACACTAAAGGATCATGTTGAAAAAGGTGAAGAAAGATTCGTCATTGAATGG
GTACGTGATCCTGATGGTGCCCCTGACAAAGGTGCTGTTTATTATGAAATGTTATCCTTT
TCAGAACCAAGCTATTGGTTATCTCAATTGGGTTATCCTGTAACTCGTTACTTTCAAAAT
AAATTTGTTGTTGATTCATGTAATCAAATGTTAAAAGCAGTGGGTTCAAATCAAAATGTT
AGACATGTATAATTAAGTATTATTAAAATAATAATAAAATAAATAAATAAAAAAAAATAA
AATAAAATAAATTATAAATTTATTAAAAAT
Length of 3' end seq. 560
Connected seq. ID SSI354P
Connected seq. 
>SSI354P.Seq
CATCACAGCTAACCTAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAAAAATAATAATAATAATAATAATAAACCAACTAC
ACCAACATTTGTACCATCTTCACCAAGTCAATATAGTACAATTAATAAAAGTACAATTAT
AAATAATAATACATTTATACGTAGAAATAGTTCAATGTCACAATTAAATAATAGTGGTGG
TGGTAATGTTAATGGTAATAATAATAATAATAATAATAATAATAATAATAATAATATTAA
TATTAATAATAGTGGAGTTGGTGGTAGAAGAAATAGTGTTATGGATTTACAAAATAAACT
TTTAAATCAATGTGATGAATCAGAATCAAATAAATTAGTAAAGAGAGTTTGGTCAGTTTT
AAATTTAACATCAATTTCAAATTCAGGTGGTGGTGATGAATCAGATGATGATGATGAAGA
AGCAGAGAGAAATCAAAGATCTTTAACACCAATTATTGTACCACAATTAATTGATGGTGG
TCTTTCAAATCATCCAATACTAAATCA----------TTCAATTGGGTACAGGTGTTGAA
TGTTTTCAAAAAGCAGTTGCAGCACTCAAACAATGGAAACACTTTGATTTAGATTGGGTA
GATTTTTACTTTAAAAATACACCTATTGCAGTGGGTGAAACCGTTGGAATCTTGTCAAAG
CAAGTTGGTTTTTGGATTCTATCATTTGCTCGTATCAATTATCTTTACGATGGTGATCAA
GAAGATGGTTCAATTAAATTTGGTTATTCATATGGTACACTAAAGGATCATGTTGAAAAA
GGTGAAGAAAGATTCGTCATTGAATGGGTACGTGATCCTGATGGTGCCCCTGACAAAGGT
GCTGTTTATTATGAAATGTTATCCTTTTCAGAACCAAGCTATTGGTTATCTCAATTGGGT
TATCCTGTAACTCGTTACTTTCAAAATAAATTTGTTGTTGATTCATGTAATCAAATGTTA
AAAGCAGTGGGTTCAAATCAAAATGTTAGACATGTATAATTAAGTATTATTAAAATAATA
ATAAAATAAATAAATAAAAAAAAATAAAATAAAATAAATTATAAATTTATTAAAAAT
Length of connected seq. 1127
Full length Seq ID -
Full length Seq. -
Length of full length seq. -