>SSI352 (SSI352Q) /CSM/SS/SSI3-C/SSI352Q.Seq.d/
AACGTGAAGTAGGTACTGGTTACTTTGATCAAGTTTCTCAAATTATCTCTGGTGGTCAAT
CTTCAACATTAGCTTTAGTAGGTTCAACTGAAGAAGAACAATTTGATGAACATATTGAAA
AGAAAAAGAAAGTTGCTCATAATAATAATGGAAATAATAAAAACAAAGCTGCAAGTGTTC
AAAACTAATTAATTTTTATTTTAAAAAAAAATACAAACAAAAGAAAAAAAAAAAATTCTA
TTTTCAAACTCAATATTACTAAAAATATTTTTTAGATTTTCCAACTTAAATATATATATA
CAAAATTAAAAAATTAATAATTTAAAAAATAAAATAAAATAAATTTTTCCTTTATAATXX
XXXXXXXX

REVGTGYFDQVSQIISGGQSSTLALVGSTEEEQFDEHIEKKKKVAHNNNGNNKNKAASVQ
N*lifilkkntnkrkkknsifklnitknif*ifqlkyiytklkn**fkk*nkinfsfi--
-

Frame A:
nvk*vlvtlikflklslvvnlqh*l**vqlkknnlmnilkrkrklliiimeiiktklqvf
ktn*flf*kkiqtkekkkilfsnsillkiffrfsnlniyiqn*kinnlknkik*ifpl*-
--


Frame B:
t*srywll*ssfsnylwwsifnisfsrfn*rrti**ty*kekescs***wk**kqsckcs
klinfyfkkkykqkkkkkfyfqtqyy*kyfldfpt*iyiykikklii*kik*nkffly--
-


Frame C:
REVGTGYFDQVSQIISGGQSSTLALVGSTEEEQFDEHIEKKKKVAHNNNGNNKNKAASVQ
N*lifilkkntnkrkkknsifklnitknif*ifqlkyiytklkn**fkk*nkinfsfi--
-

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM553 (SSM553Q) /CSM/SS/SSM5-C/SSM553Q.Seq.d/                        400   e-111
SSL675 (SSL675Q) /CSM/SS/SSL6-D/SSL675Q.Seq.d/                        400   e-111
SSI352 (SSI352Q) /CSM/SS/SSI3-C/SSI352Q.Seq.d/                        400   e-111
SSH629 (SSH629Q) /CSM/SS/SSH6-B/SSH629Q.Seq.d/                        400   e-111
SSC894 (SSC894Q) /CSM/SS/SSC8-D/SSC894Q.Seq.d/                        400   e-111
SSA886 (SSA886Q) /CSM/SS/SSA8-D/SSA886Q.Seq.d/                        400   e-111
SSA318 (SSA318Q) /CSM/SS/SSA3-A/SSA318Q.Seq.d/                        400   e-111
SLK824 (SLK824Q) /CSM/SL/SLK8-A/SLK824Q.Seq.d/                        400   e-111
SLI615 (SLI615Q) /CSM/SL/SLI6-A/SLI615Q.Seq.d/                        400   e-111
SLI231 (SLI231Q) /CSM/SL/SLI2-B/SLI231Q.Seq.d/                        400   e-111

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   400  e-127  3
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    92  2e-12  8
AJ416696|AJ416696.2 Plasmodium falciparum mRNA for putative cyclin 2 (cyc-2 gene).    40  0.003  4
AL449929|AL449929.1 Streptococcus pneumoniae serotype 19F  *** SEQUENCING IN PROGRESS  *** from clone G54.    32  0.004  7
AC116925|AC116925.2 Dictyostelium discoideum chromosome 2 map 4189423-4228998 strain AX4, complete sequence.    40  0.005  3
BH210660|BH210660.1 Sm1-61O16.TF Sm1 Schistosoma mansoni genomic clone Sm1-61O16, DNA sequence.    38  0.011  2
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    36  0.011  7
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence.    42  0.012  4
AC004153|AC004153.7 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    40  0.026  9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    40  0.029  7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117076_17(AC117076|pid:none) Dictyostelium discoideum chromoso...    59   7e-08
CP000804_4260(CP000804|pid:none) Roseiflexus castenholzii DSM 13...    43   0.004
CP000909_3808(CP000909|pid:none) Chloroflexus aurantiacus J-10-f...    43   0.004
CP000922_2214(CP000922|pid:none) Anoxybacillus flavithermus WK1,...    43   0.004
CP001337_40(CP001337|pid:none) Chloroflexus aggregans DSM 9485, ...    43   0.004
CP000557_578(CP000557|pid:none) Geobacillus thermodenitrificans ...    43   0.004
BA000043_676(BA000043|pid:none) Geobacillus kaustophilus HTA426 ...    43   0.004
AE017221_1479(AE017221|pid:none) Thermus thermophilus HB27, comp...    42   0.005
CP000903_1014(CP000903|pid:none) Bacillus weihenstephanensis KBA...    42   0.007
AP006840_590(AP006840|pid:none) Symbiobacterium thermophilum IAM...    42   0.007

 psg: 0.75  gvh: 0.44  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SSI352 is cyt

>SSI352F.Seq
AACGTGAAGTAGGTACTGGTTACTTTGATCAAGTTTCTCAAATTATCTCTGGTGGTCAAT
CTTCAACATTAGCTTTAGTAGGTTCAACTGAAGAAGAACAATTTGATGAACATATTGAAA
AGAAAAAGAAAGTTGCTCATAATAATAATGGAAATAATAAAAACAAAGCTGCAAGTGTTC
AAAACTAATTAATTTTTATTTTAAAAAAAAATACAAACAAAAGAAAAAAAAAAAATTCTA
TTTTCAAACTCAATATTACTAAAAATATTTTTTAGATTTTCCAACTTAAATATATATATA
CAAAATTAAAAAATTAATAATTTAAAAAATAAAATAAAATAAATTTTTCCTTTATAAT