>SSI343 (SSI343Q) /CSM/SS/SSI3-B/SSI343Q.Seq.d/
XXXXXXXXXXGGAACTACAAAAATTGGTCAAACCGATGTTGATGTATGGATTGTCAAAGG
TAAACAACAATGCAATGTAACCAGATCTTGTATTCTAATTCAAAAGGATACATGTACCCT
TATGTCTGCCAATTTCGGTAACAAAGATAAATCAAATCTAGGTTTCTCACTTTTAAATTA
TTATAGATATGAAAATAAACCACATTATGATAAATTCCAATTACCATCACAATGTTGGGA
TGTTAAACCAAAAGATGAAAATGAAAATAAAGAAGAACAAGGTTTATTTGCAAATGAAGA
AGAACTAGAAAATAAAGAATATTTTGGTGATAACCAACAAGCTCCATCAATGAGAATTAC
TAAAAATAATCCACATCTAAATAATAATAATAATAATAAAAAATATCATCATAGAGAACA
TGAAACACCAAATCCAGACCTTATCAAAACAACCACAAAAACATCAACAAAAACAACATC
ATTTTCAAGAGCCACTAATGATTCACCAAAATCAATTGATTTCCATCACTTATTTTAATT
TTTAAATTCTAAATAAAGTTTAAATTTAAATATTTTCTTTTGTTTTTTTTTTATAAAAAA
AAAAAAAAAAAAAAAAAA

---TTKIGQTDVDVWIVKGKQQCNVTRSCILIQKDTCTLMSANFGNKDKSNLGFSLLNYY
RYENKPHYDKFQLPSQCWDVKPKDENENKEEQGLFANEEELENKEYFGDNQQAPSMRITK
NNPHLNNNNNNKKYHHREHETPNPDLIKTTTKTSTKTTSFSRATNDSPKSIDFHHLF*fl
nsk*slnlniffcfffikkkkkkk

Frame A:
---elqklvkpmlmyglskvnnnam*pdlvf*fkrihvplclpisvtkinqi*vshf*ii
idmkinhiminsnyhhnvgmlnqkmkmkikknkvylqmkkn*kiknilvitnklhq*ell
kiihi*iiiiiikniiienmkhqiqtlskqpqkhqqkqhhfqeplmihqnqlisityfnf
*ilnkv*i*ifsfvffl*kkkkkkk


Frame B:
---nyknwsnrc*cmdcqr*ttmqcnqilysnskgymypyvcqfr*qr*iksrfltfkll
*i*k*ttl**ipititmlgc*tkr*k*k*rrtrfick*rrtrk*rifw**ptssineny*
k*stsk******kiss*rt*ntksrpyqnnhkninknniifksh**ftkin*fpslilif
kf*ikfkfkyfllfffykkkkkkkk


Frame C:
---TTKIGQTDVDVWIVKGKQQCNVTRSCILIQKDTCTLMSANFGNKDKSNLGFSLLNYY
RYENKPHYDKFQLPSQCWDVKPKDENENKEEQGLFANEEELENKEYFGDNQQAPSMRITK
NNPHLNNNNNNKKYHHREHETPNPDLIKTTTKTSTKTTSFSRATNDSPKSIDFHHLF*fl
nsk*slnlniffcfffikkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI343 (SSI343Q) /CSM/SS/SSI3-B/SSI343Q.Seq.d/                        692   0.0
SSM335 (SSM335Q) /CSM/SS/SSM3-B/SSM335Q.Seq.d/                        684   0.0
SSK867 (SSK867Q) /CSM/SS/SSK8-C/SSK867Q.Seq.d/                        684   0.0
SSK701 (SSK701Q) /CSM/SS/SSK7-A/SSK701Q.Seq.d/                        684   0.0
SSK159 (SSK159Q) /CSM/SS/SSK1-C/SSK159Q.Seq.d/                        684   0.0
SSF594 (SSF594Q) /CSM/SS/SSF5-D/SSF594Q.Seq.d/                        684   0.0
SSD307 (SSD307Q) /CSM/SS/SSD3-A/SSD307Q.Seq.d/                        662   0.0
SSM571 (SSM571Q) /CSM/SS/SSM5-C/SSM571Q.Seq.d/                        652   0.0
SSI591 (SSI591Q) /CSM/SS/SSI5-D/SSI591Q.Seq.d/                        652   0.0
SSH876 (SSH876Q) /CSM/SS/SSH8-D/SSH876Q.Seq.d/                        648   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC127476|AC127476.3 Felis catus clone RP86-135C5, WORKING DRAFT SEQUENCE, 6 ordered pieces.    46  1e-04  3
AC110672|AC110672.2 Canis familiaris clone RP81-72H24, WORKING DRAFT SEQUENCE, 4 ordered pieces.    46  0.003  6
AC020984|AC020984.4 Homo sapiens clone RP11-115M9, WORKING DRAFT SEQUENCE, 2 ordered pieces.    42  0.021  4
AC015476|AC015476.10 Homo sapiens, clone RP11-16G11, complete sequence.    42  0.023  4
CA984857|CA984857.1 AGENCOURT_11280334 Wellcome CRC pSK egg Xenopus laevis cDNA clone IMAGE:6869191 5', mRNA sequence.    50  0.032  1
CA788246|CA788246.1 AGENCOURT_11030714 NICHD XGC OO1 Xenopus laevis cDNA clone IMAGE:6861159 5', mRNA sequence.    50  0.032  1
BU901483|BU901483.1 AGENCOURT_10184266 NICHD XGC Ov1 Xenopus laevis cDNA clone IMAGE:6318423 5', mRNA sequence.    50  0.032  1
BJ037520|BJ037520.1 Xenopus laevis cDNA clone:XL040m05, 5' end, single read.    50  0.032  1
CD255193|CD255193.1 AGENCOURT_14158214 NICHD_XGC_Brn1 Xenopus laevis cDNA clone IMAGE:6953588 5', mRNA sequence.    50  0.032  1
BG893125|BG893125.1 daa88e02.y1 Wellcome CRC pRN3 St13 17 egg animal cap Xenopus laevis cDNA clone IMAGE:4084323 5' similar to TR:Q9UKY7 Q9UKY7 HYPOTHETICAL 27.3 KD PROTEIN. ;, mRNA sequence.    50  0.032  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116550_6(AC116550|pid:none) Dictyostelium discoideum chromosom...    44   0.004
AC116550_3(AC116550|pid:none) Dictyostelium discoideum chromosom...    43   0.008
CP000592_215(CP000592|pid:none) Ostreococcus lucimarinus CCE9901...    33   8.3

 psg: 0.75  gvh: 0.31  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for SSI343 is nuc

>SSI343Z.Seq
----------GGAACTACAAAAATTGGTCAAACCGATGTTGATGTATGGATTGTCAAAGG
TAAACAACAATGCAATGTAACCAGATCTTGTATTCTAATTCAAAAGGATACATGTACCCT
TATGTCTGCCAATTTCGGTAACAAAGATAAATCAAATCTAGGTTTCTCACTTTTAAATTA
TTATAGATATGAAAATAAACCACATTATGATAAATTCCAATTACCATCACAATGTTGGGA
TGTTAAACCAAAAGATGAAAATGAAAATAAAGAAGAACAAGGTTTATTTGCAAATGAAGA
AGAACTAGAAAATAAAGAATATTTTGGTGATAACCAACAAGCTCCATCAATGAGAATTAC
TAAAAATAATCCACATCTAAATAATAATAATAATAATAAAAAATATCATCATAGAGAACA
TGAAACACCAAATCCAGACCTTATCAAAACAACCACAAAAACATCAACAAAAACAACATC
ATTTTCAAGAGCCACTAATGATTCACCAAAATCAATTGATTTCCATCACTTATTTTAATT
TTTAAATTCTAAATAAAGTTTAAATTTAAATATTTTCTTTTGTTTTTTTTTTATAAAAAA
AAAAAAAAAAAAAAAAAA