>SSI338 (SSI338Q) /CSM/SS/SSI3-B/SSI338Q.Seq.d/
TATTTATCTAAAAATTAAATTTGAAAGTTTTTAACAAAAAAAAAAAAAAAAAAAAAAAAA
AATATAATTAAATAATAATTAATTTATTACAATAAAAAAAAAAAAAAAATAATTTTAAAA
CTCAATTTATTATATCAATTCTTTTTTAAAATCCTGTATTTTAGACCACAATCATTCCCA
ACAAAACAATTAGATTTTTATTTTAGAATATATTGACCATTTGTCATTGTATATAACAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXX

ylskn*i*kfltkkkkkkkkniik**LIYYNKKKKKIILKLNLLYQFFFKILYFRPQSFP
TKQLDFYFRIY*pfvivynkkkkkkkkkkkkkkkkk---

Frame A:
ylskn*i*kfltkkkkkkkkniik**LIYYNKKKKKIILKLNLLYQFFFKILYFRPQSFP
TKQLDFYFRIY*pfvivynkkkkkkkkkkkkkkkkk---


Frame B:
iylkikfesf*qkkkkkkkki*lnnn*fitikkkkk*f*nsiyyinsflkscildhnhsq
qnn*ifileyidhlslyitkkkkkkkkkkkkkkkk---


Frame C:
fi*klnlkvfnkkkkkkkkkyn*iiinllq*kkkknnfktqfiisilf*npvf*ttiipn
ktirflf*niltichci*qkkkkkkkkkkkkkkkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI338 (SSI338Q) /CSM/SS/SSI3-B/SSI338Q.Seq.d/                        254   7e-67
AFE206 (AFE206Q) /CSM/AF/AFE2-A/AFE206Q.Seq.d/                        252   3e-66
CHE762 (CHE762Q) /CSM/CH/CHE7-C/CHE762Q.Seq.d/                        224   6e-58
CFF291 (CFF291Q) /CSM/CF/CFF2-D/CFF291Q.Seq.d/                        208   3e-53
CHB488 (CHB488Q) /CSM/CH/CHB4-D/CHB488Q.Seq.d/                        180   8e-45
FC-AH17 (FC-AH17Q) /CSM/FC/FC-AH/FC-AH17Q.Seq.d/                      133   2e-30
SSK449 (SSK449Q) /CSM/SS/SSK4-C/SSK449Q.Seq.d/                         70   2e-11
SSB240 (SSB240Q) /CSM/SS/SSB2-B/SSB240Q.Seq.d/                         70   2e-11
SSA614 (SSA614Q) /CSM/SS/SSA6-A/SSA614Q.Seq.d/                         70   2e-11
SLC285 (SLC285Q) /CSM/SL/SLC2-D/SLC285Q.Seq.d/                         70   2e-11

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL732458|AL732458.5 Zebrafish DNA sequence from clone BUSM1-42H5 in linkage group 9  Contains part of two novel genes.    52  0.003  3
BH971424|BH971424.1 odg19h03.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    50  0.015  1
AC130615|AC130615.4 Rattus norvegicus clone CH230-12A13, WORKING DRAFT SEQUENCE, 2 unordered pieces.    50  0.015  1
AX348413|AX348413.1 Sequence 108 from Patent WO0202806.           32  0.026  6
AF165818|AF165818.4 Guillardia theta nucleomorph chromosome 1, complete sequence.    42  0.030  7
AL713987|AL713987.7 Zebrafish DNA sequence from clone BUSM1-145B16 in linkage group 9.    52  0.056  2
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          48  0.060  1
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    38  0.081  7
AX348515|AX348515.1 Sequence 23 from Patent WO0202809.            34  0.085  3
AX345520|AX345520.1 Sequence 591 from Patent WO0200928.           34  0.085  3

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 213,477,688

 psg: 0.79  gvh: 0.39  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.20  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSI338 is nuc

>SSI338F.Seq
TATTTATCTAAAAATTAAATTTGAAAGTTTTTAACAAAAAAAAAAAAAAAAAAAAAAAAA
AATATAATTAAATAATAATTAATTTATTACAATAAAAAAAAAAAAAAAATAATTTTAAAA
CTCAATTTATTATATCAATTCTTTTTTAAAATCCTGTATTTTAGACCACAATCATTCCCA
ACAAAACAATTAGATTTTTATTTTAGAATATATTGACCATTTGTCATTGTATATAACAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA