>SSI336 (SSI336Q) /CSM/SS/SSI3-B/SSI336Q.Seq.d/
XXXXXXXXXXATTTTACGATGATGAATATTGTATTGCAATCGAAGATATTAACCCACAAG
CACCAGTACATCTTTTAGTTATTCCAAAACTTGCCGTTGGTGGTCTTAGTGATGTCGCCA
ATGTTGACCTTGAAAAATACAAAGAATCTATGGGTCATATCATGTCAAAAATTCATCATA
TCGCTTCTCTTAAAGGTGCTGATTCTTACAGATTGGTCATTAATGAAGGTGTTTTAGGTC
AACAATCTGTTAGATGGTTACATATTCATATCCTTGGTGGTAGACAAATGAATTGGCCAC
CAGGCTAATTTCTATTAAAGAATTCTTCATTGTACCTATTTAAACCTTTTACTAATAATA
GTAAAGAAAATTCACCATTGGCACGTACATAATAAAAAAATATAACCTTTTAAAGGATCA
ATAGCAAAAAAAAAA

---FYDDEYCIAIEDINPQAPVHLLVIPKLAVGGLSDVANVDLEKYKESMGHIMSKIHHI
ASLKGADSYRLVINEGVLGQQSVRWLHIHILGGRQMNWPPG*fllknsslylfkpftnns
kensplart**knitf*rinskkk

Frame A:
---FYDDEYCIAIEDINPQAPVHLLVIPKLAVGGLSDVANVDLEKYKESMGHIMSKIHHI
ASLKGADSYRLVINEGVLGQQSVRWLHIHILGGRQMNWPPG*fllknsslylfkpftnns
kensplart**knitf*rinskkk


Frame B:
---ftmmnivlqskilthkhqyif*lfqnlplvvlvmspmltlkntknlwviscqkfiis
lllkvliltdwslmkvf*vnnlldgyifislvvdk*ighqanfy*rilhctylnllliiv
kkihhwhvhnkki*pfkgsiakkk


Frame C:
---lr**ilycnrry*ptststsfsysktcrwws**crqc*p*kiqriygsyhvknssyr
fs*rc*flqigh**rcfrstic*mvtysypww*tnelatrlisikeffivpi*tfy****
rkftigtyiikkynllkdq*qkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI336 (SSI336Q) /CSM/SS/SSI3-B/SSI336Q.Seq.d/                        781   0.0
VSE744 (VSE744Q) /CSM/VS/VSE7-B/VSE744Q.Seq.d/                        751   0.0
VSD845 (VSD845Q) /CSM/VS/VSD8-B/VSD845Q.Seq.d/                        751   0.0
VSB884 (VSB884Q) /CSM/VS/VSB8-D/VSB884Q.Seq.d/                        751   0.0
VSB635 (VSB635Q) /CSM/VS/VSB6-B/VSB635Q.Seq.d/                        751   0.0
SSM528 (SSM528Q) /CSM/SS/SSM5-B/SSM528Q.Seq.d/                        751   0.0
SSL530 (SSL530Q) /CSM/SS/SSL5-B/SSL530Q.Seq.d/                        751   0.0
SSK724 (SSK724Q) /CSM/SS/SSK7-A/SSK724Q.Seq.d/                        751   0.0
SSK684 (SSK684Q) /CSM/SS/SSK6-D/SSK684Q.Seq.d/                        751   0.0
SSK564 (SSK564Q) /CSM/SS/SSK5-C/SSK564Q.Seq.d/                        751   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB029922|AB029922.1 Dictyostelium discoideum DD-1 mRNA, complete cds.   751  0.0  1
U61986|U61986.1 Dictyostelium discoideum PkiA (pkiA) mRNA, complete cds.   521  0.0  3
BH605184|BH605184.1 BOGSB09TR BOGS Brassica oleracea genomic clone BOGSB09, DNA sequence.    48  0.004  2
BH724763|BH724763.1 BOMPT20TF BO_2_3_KB Brassica oleracea genomic clone BOMPT20, DNA sequence.    48  0.089  1
AF056206|AF056206.1 Plasmodium falciparum putative protein kinase C interacting protein 1 (pkci1) gene, complete cds.    44  0.10  2
BX219259|BX219259.1 Danio rerio genomic clone DKEY-47E15, genomic survey sequence.    46  0.35  1
AC107281|AC107281.4 Rattus norvegicus clone CH230-82A8, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44  1.4  1
CB344637|CB344637.2 CA48EN0002_IaF_F04 Cabernet Sauvignon Leaf-CA48EN Vitis vinifera cDNA clone CA48EN0002_IaF_F04 5', mRNA sequence.    44  1.4  1
T18067|T18067.1 0446c3 cbsPfHB3.1, Debopam Chakrabarti Plasmodium falciparum cDNA clone 0446c 5', mRNA sequence.    44  1.4  1
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           44  1.4  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q23921) RecName: Full=Protein pkiA; AltName: Full=Protein DD-1;...   205   3e-52
U61986_1(U61986|pid:none) Dictyostelium discoideum PkiA (pkiA) m...   179   3e-44
BC068885_1(BC068885|pid:none) Xenopus laevis hypothetical protei...   102   3e-21
BC135760_1(BC135760|pid:none) Xenopus tropicalis cDNA clone IMAG...   102   5e-21
(Q8SQ21) RecName: Full=Histidine triad nucleotide-binding protei...    99   5e-20
(Q9BX68) RecName: Full=Histidine triad nucleotide-binding protei...    97   1e-19
CR847821_2(CR847821|pid:none) Zebrafish DNA sequence from clone ...    97   1e-19
AY860950_1(AY860950|pid:none) Bombyx mori protein kinase c inhib...    97   1e-19
BA000045_929(BA000045|pid:none) Gloeobacter violaceus PCC 7421 D...    97   1e-19
AF085236_1(AF085236|pid:none) Homo sapiens protein kinase C inhi...    97   1e-19

 psg: 0.75  gvh: 0.46  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SSI336 is cyt

>SSI336Z.Seq
----------ATTTTACGATGATGAATATTGTATTGCAATCGAAGATATTAACCCACAAG
CACCAGTACATCTTTTAGTTATTCCAAAACTTGCCGTTGGTGGTCTTAGTGATGTCGCCA
ATGTTGACCTTGAAAAATACAAAGAATCTATGGGTCATATCATGTCAAAAATTCATCATA
TCGCTTCTCTTAAAGGTGCTGATTCTTACAGATTGGTCATTAATGAAGGTGTTTTAGGTC
AACAATCTGTTAGATGGTTACATATTCATATCCTTGGTGGTAGACAAATGAATTGGCCAC
CAGGCTAATTTCTATTAAAGAATTCTTCATTGTACCTATTTAAACCTTTTACTAATAATA
GTAAAGAAAATTCACCATTGGCACGTACATAATAAAAAAATATAACCTTTTAAAGGATCA
ATAGCAAAAAAAAAA