SSI328
Library SS
(Link to library)
Clone ID SSI328
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16027-1
Original site URL
Representative seq. ID SSI328Z
(Link to Original site)
Representative DNA sequence
>SSI328 (SSI328Q) /CSM/SS/SSI3-B/SSI328Q.Seq.d/
XXXXXXXXXXCTCGTACCAGATACTTGTTCTCTCGTGGTTTCAGAAACCATGGTCTCTTA
CAAACCACCACCTTCTTAAGAACTTTCCGTTTAGGTGATTACGTTGATATCAAAGCCACC
GGTAATGTACACAAAGGTATGCCACACAAATTCTACCACGGTCGTACCGGTCGTGTTTGG
AATGTTACTCCACGTGCTGTTGGTGTCATCATCAACAAACGTGTTGGTCCAAGAATCATT
GCCAAGAAAATCCACGTCAGAACTGAACACGTCAAACCATCAAACTCCATGGCTGCTCAC
TTAAAACGTATCCAAGAAAACAAAAAAGCTGTCGTTGAAGCCAAGAAAGCCGGTAAATGG
GTCGATGTTAGACGTAACCCAGCTGCACCAAAGGACGGTTTCTTTGTCAACCCAAGAAAC
ACTGAATTCGTTGAAGTCAAACCAGTCAAATACGAACTTTTATTATAAATTAATTTAAAA
GAGTGGTGGCTAATATGGTTCAATCGCAATCCTTTGATTATCCAAATTTGTCTTATTTAA
AAAAGAAAAATAAAAAAAAATATAAAAAAAAAAAAA
sequence update 1998. 1.22
Translated Amino Acid sequence
---RTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGRTGRVWN
VTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAKKAGKWV
DVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELLL*inlkewwliwfnrnpliiqicli*k
rkikknikkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---syqilvlswfqkpwsltnhhllknfpfr*lr*yqshr*ctqryatqilprsyrscle
cystccwchhqqtcwsknhcqenprqn*trqtiklhgcslktyprkqkscr*sqesr*mg
rc*t*psctkgrflcqpkkh*ir*sqtsqirtfiin*fkrvvanmvqsqsfdypnlsylk
kknkkkykkkk


Frame B:
---RTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGRTGRVWN
VTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAKKAGKWV
DVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELLL*inlkewwliwfnrnpliiqicli*k
rkikknikkkk


Frame C:
---vpdtcslvvsetmvsykppps*elsv*vitliskppvmytkvchtnsttvvpvvfgm
llhvllvssstnvlvqeslprkstselntsnhqtpwllt*nvskktkklslkprkpvngs
mldvtqlhqrtvslstqetlnslksnqsntnfyykli*ksgg*ygsiail*lskfvlfkk
ek*kki*kkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSF754 (VSF754Q) /CSM/VS/VSF7-C/VSF754Q.Seq.d/ 1047 0.0
VSB311 (VSB311Q) /CSM/VS/VSB3-A/VSB311Q.Seq.d/ 1047 0.0
VSA718 (VSA718Q) /CSM/VS/VSA7-A/VSA718Q.Seq.d/ 1047 0.0
VSA693 (VSA693Q) /CSM/VS/VSA6-D/VSA693Q.Seq.d/ 1047 0.0
VSA156 (VSA156Q) /CSM/VS/VSA1-C/VSA156Q.Seq.d/ 1047 0.0
VHK774 (VHK774Q) /CSM/VH/VHK7-D/VHK774Q.Seq.d/ 1047 0.0
VHH523 (VHH523Q) /CSM/VH/VHH5-A/VHH523Q.Seq.d/ 1047 0.0
VFL168 (VFL168Q) /CSM/VF/VFL1-C/VFL168Q.Seq.d/ 1047 0.0
VFJ214 (VFJ214Q) /CSM/VF/VFJ2-A/VFJ214Q.Seq.d/ 1047 0.0
SSI328 (SSI328Q) /CSM/SS/SSI3-B/SSI328Q.Seq.d/ 1047 0.0

own update 2002.12.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CD821661|CD821661.1 BN25.042J02F011128 BN25 Brassica napus cDNA clone BN25042J02, mRNA sequence. 92 9e-15 1
CD834783|CD834783.1 BN45.043C07F011229 BN45 Brassica napus cDNA clone BN45043C07, mRNA sequence. 92 9e-15 1
CD823135|CD823135.1 BN25.047M03F020109 BN25 Brassica napus cDNA clone BN25047M03, mRNA sequence. 90 4e-14 1
CD822326|CD822326.1 BN25.044N04F011129 BN25 Brassica napus cDNA clone BN25044N04, mRNA sequence. 90 4e-14 1
CD811839|CD811839.1 BN10.019B18F020121 BN10 Brassica napus cDNA clone BN10019B18, mRNA sequence. 90 4e-14 1
CD812106|CD812106.1 BN10.020A24F020208 BN10 Brassica napus cDNA clone BN10020A24, mRNA sequence. 90 4e-14 1
CD843139|CD843139.1 RFO2.130K24F011011 RFO2 Brassica napus cDNA clone RFO2130K24, mRNA sequence. 84 2e-12 1
CD841034|CD841034.1 RFO2.121J01F010608 RFO2 Brassica napus cDNA clone RFO2121J01, mRNA sequence. 84 2e-12 1
CD839405|CD839405.1 RFO2.115C19F010529 RFO2 Brassica napus cDNA clone RFO2115C19, mRNA sequence. 84 2e-12 1
CD821283|CD821283.1 BN25.041G04F011128 BN25 Brassica napus cDNA clone BN25041G04, mRNA sequence. 84 2e-12 1
dna update 2003. 7.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54X53) RecName: Full=60S ribosomal protein L21; 249 3e-65
AY813279_1(AY813279|pid:none) Schistosoma japonicum SJCHGC00639 ... 146 3e-34
AY357070_1(AY357070|pid:none) Hippocampus comes 60S ribosomal pr... 140 2e-32
GN110337_1(GN110337|pid:none) Sequence 15118 from Patent WO20090... 140 2e-32
GN110445_1(GN110445|pid:none) Sequence 15226 from Patent WO20090... 139 4e-32
GN110339_1(GN110339|pid:none) Sequence 15120 from Patent WO20090... 139 5e-32
BC071354_1(BC071354|pid:none) Danio rerio ribosomal protein L21,... 138 9e-32
GN110301_1(GN110301|pid:none) Sequence 15082 from Patent WO20090... 138 1e-31
GN110441_1(GN110441|pid:none) Sequence 15222 from Patent WO20090... 138 1e-31
AF401575_1(AF401575|pid:none) Ictalurus punctatus ribosomal prot... 138 1e-31
protein update 2009. 6.13
PSORT

psg: 0.87 gvh: 0.40 alm: 0.50 top: 0.50 tms: 0.00 mit: 0.57 mip: 0.05
nuc: 0.12 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: mitochondrial
24.0 %: nuclear
4.0 %: vacuolar
4.0 %: cytoplasmic

>> prediction for SSI328 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI328Z
3' end seq.
>SSI328Z.Seq
----------CTCGTACCAGATACTTGTTCTCTCGTGGTTTCAGAAACCATGGTCTCTTA
CAAACCACCACCTTCTTAAGAACTTTCCGTTTAGGTGATTACGTTGATATCAAAGCCACC
GGTAATGTACACAAAGGTATGCCACACAAATTCTACCACGGTCGTACCGGTCGTGTTTGG
AATGTTACTCCACGTGCTGTTGGTGTCATCATCAACAAACGTGTTGGTCCAAGAATCATT
GCCAAGAAAATCCACGTCAGAACTGAACACGTCAAACCATCAAACTCCATGGCTGCTCAC
TTAAAACGTATCCAAGAAAACAAAAAAGCTGTCGTTGAAGCCAAGAAAGCCGGTAAATGG
GTCGATGTTAGACGTAACCCAGCTGCACCAAAGGACGGTTTCTTTGTCAACCCAAGAAAC
ACTGAATTCGTTGAAGTCAAACCAGTCAAATACGAACTTTTATTATAAATTAATTTAAAA
GAGTGGTGGCTAATATGGTTCAATCGCAATCCTTTGATTATCCAAATTTGTCTTATTTAA
AAAAGAAAAATAAAAAAAAATATAAAAAAAAAAAAA
Length of 3' end seq. 566
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -