>SSI324 (SSI324Q) /CSM/SS/SSI3-A/SSI324Q.Seq.d/
AAATGATTGTTGATAATTTAAAAAATCTTATTTTAAGCAAAAACTCTAATCAAGGAGTTA
CCCCAAATGCCTCTATCGGTTTTAGATCGAATAAATATGGCTCAAATTTTNTTTGCGAGT
CTGATTCGATACAAATTAAAGCAACTCCTACTATTACCTTCACTTATACAAAACCTGGTT
ATAATAAAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

k*llii*kilf*AKTLIKELPQMPLSVLDRINMAQIXFASLIRYKLKQLLLLPSLIQNLV
IIKLKKKKKKKKKKK

Frame A:
k*llii*kilf*AKTLIKELPQMPLSVLDRINMAQIXFASLIRYKLKQLLLLPSLIQNLV
IIKLKKKKKKKKKKK


Frame B:
ndc**fkksyfkqkl*srsypkclyrf*ie*iwlkfxlrv*fdtn*snsyyylhlyktwl
**nlkkkkkkkkkkk


Frame C:
mivdnlknlilsknsnqgvtpnasigfrsnkygsnfxcesdsiqikatptitftytkpgy
nkt*kkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI324 (SSI324Q) /CSM/SS/SSI3-A/SSI324Q.Seq.d/                        375   e-103
SHG324 (SHG324Q) /CSM/SH/SHG3-A/SHG324Q.Seq.d/                        359   1e-98
AHI637 (AHI637Q) /CSM/AH/AHI6-B/AHI637Q.Seq.d/                        359   1e-98
VSK176 (VSK176Q) /CSM/VS/VSK1-D/VSK176Q.Seq.d/                         36   0.21
VHL322 (VHL322Q) /CSM/VH/VHL3-A/VHL322Q.Seq.d/                         34   0.84
VFD736 (VFD736Q) /CSM/VF/VFD7-B/VFD736Q.Seq.d/                         34   0.84
CHR351 (CHR351Q) /CSM/CH/CHR3-C/CHR351Q.Seq.d/                         34   0.84
CHM581 (CHM581Q) /CSM/CH/CHM5-D/CHM581Q.Seq.d/                         34   0.84
AHG792 (AHG792Q) /CSM/AH/AHG7-D/AHG792Q.Seq.d/                         34   0.84
AFH565 (AFH565Q) /CSM/AF/AFH5-C/AFH565Q.Seq.d/                         34   0.84

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    38  0.55  5
AC079994|AC079994.5 Homo sapiens chromosome 4 clone RP11-545L22, WORKING DRAFT SEQUENCE, 23 unordered pieces.    44  0.69  1
BZ449405|BZ449405.1 BONAN25TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONAN25, DNA sequence.    44  0.69  1
B24898|B24898.1 F22J24TF IGF Arabidopsis thaliana genomic clone F22J24, genomic survey sequence.    44  0.69  1
AC133605|AC133605.3 Homo sapiens chromosome 4 clone CTD-2012B5, WORKING DRAFT SEQUENCE, 3 unordered pieces.    44  0.69  1
AL356242|AL356242.17 Human DNA sequence from clone RP11-12F17 on chromosome 6.    44  0.69  1
U56141|U56141.1 Arabidopsis thaliana EMB30 gene, complete cds.    44  0.69  1
AC145441|AC145441.1 Bos taurus clone RP42-141A12, WORKING DRAFT SEQUENCE, 8 unordered pieces.    44  0.69  1
U36433|U36433.1 Arabidopsis thaliana pattern-formation (GNOM) gene, complete cds.    44  0.69  1
CD606648|CD606648.1 RZ153A4H11.T7 Zebrafish Kidney Marrow cDNA library Danio rerio cDNA clone RZ153A4H11 3', mRNA sequence.    44  0.69  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H10) RecName: Full=Uncharacterized protein DDB_G0289767;           96   5e-19

 psg: 0.83  gvh: 0.52  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.44  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 24.0 %: mitochondrial
	 20.0 %: cytoplasmic

>> prediction for SSI324 is nuc

>SSI324E.Seq
AAATGATTGTTGATAATTTAAAAAATCTTATTTTAAGCAAAAACTCTAATCAAGGAGTTA
CCCCAAATGCCTCTATCGGTTTTAGATCGAATAAATATGGCTCAAATTTTNTTTGCGAGT
CTGATTCGATACAAATTAAAGCAACTCCTACTATTACCTTCACTTATACAAAACCTGGTT
ATAATAAAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA