>SSI323 (SSI323Q) /CSM/SS/SSI3-A/SSI323Q.Seq.d/
XXXXXXXXXXGTATTGGTACAATCTGAAACCGCCTATTTTGGTTTAAAAACCCATGGTGA
CCATAATGATTTTATTTTCAAATTAACGGATTCAGAAACAATTAAAAAAGCCAGAGATAT
TTTGTCTGGAAAGGAAACCAATGAAGTTCATGTAATGGGTAGAATTAGAAAGAGACCTGA
AAGCTATAATCCAAAGTATTCCTTTATTCTTGACCCAGATACAATCACATTTTTTTCCAT
GGCTATTGAAGTTTGTGATGCTTCAACTATTTATGTAGAAGATCACCTTGATGAGGCCTG
TGGTGCTTTCCTCCCRGGTTGCTTCTGGTGCCCATGGTCTTCAAAACTAACAAGAGAAAT
TAAAATTTAAACTATAAGAGTAAAATTAAATTACTCATGATTAAATTTAATCAAATTAAA
TACTTAAATATTTAATAATAAAGTTTATTAAACAAAAGTTTTTATAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA

---LVQSETAYFGLKTHGDHNDFIFKLTDSETIKKARDILSGKETNEVHVMGRIRKRPES
YNPKYSFILDPDTITFFSMAIEVCDASTIYVEDHLDEACGAFLXGCFWCPWSSKLTREIK
I*tirvklnys*lnliklnt*ifnnkvy*tkvfikkkkkkkkkk

Frame A:
---ywynlkppilv*kpmvtimilfsn*riqkqlkkpeifclerkpmkfm*wvelerdlk
aiiqsiplfltqiqshffpwllkfvmlqlfm*kitlmrpvvlssxvasgahglqn*qekl
kfkl*e*n*ithd*i*sn*ilkyliikfikqkfl*kkkkkkkkkk


Frame B:
---igti*nrlfwfknpw*p**fyfqingfrnn*ksqryfvwkgnq*sscng*n*ket*k
l*skvflys*prynhiffhgy*sl*cfnylcrrsp**glwcfppxlllvpmvfktnkrn*
nlnykskikllmikfnqikylni***sllnksfykkkkkkkkkk


Frame C:
---LVQSETAYFGLKTHGDHNDFIFKLTDSETIKKARDILSGKETNEVHVMGRIRKRPES
YNPKYSFILDPDTITFFSMAIEVCDASTIYVEDHLDEACGAFLXGCFWCPWSSKLTREIK
I*tirvklnys*lnliklnt*ifnnkvy*tkvfikkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI323 (SSI323Q) /CSM/SS/SSI3-A/SSI323Q.Seq.d/                        725   0.0
SSM239 (SSM239Q) /CSM/SS/SSM2-B/SSM239Q.Seq.d/                        701   0.0
SSK842 (SSK842Q) /CSM/SS/SSK8-B/SSK842Q.Seq.d/                        701   0.0
SSK558 (SSK558Q) /CSM/SS/SSK5-C/SSK558Q.Seq.d/                        701   0.0
SSJ755 (SSJ755Q) /CSM/SS/SSJ7-C/SSJ755Q.Seq.d/                        701   0.0
SSI859 (SSI859Q) /CSM/SS/SSI8-C/SSI859Q.Seq.d/                        701   0.0
SSI820 (SSI820Q) /CSM/SS/SSI8-A/SSI820Q.Seq.d/                        701   0.0
SSI577 (SSI577Q) /CSM/SS/SSI5-D/SSI577Q.Seq.d/                        701   0.0
SSH326 (SSH326Q) /CSM/SS/SSH3-B/SSH326Q.Seq.d/                        701   0.0
SSH249 (SSH249Q) /CSM/SS/SSH2-C/SSH249Q.Seq.d/                        701   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF140044|AF140044.1 Dictyostelium discoideum putative calmodulin-binding protein CaM-BP15 mRNA, complete cds.   347  e-175  2
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.   165  9e-91  7
BZ004347|BZ004347.1 oeh57f01.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    32  0.24  3
AC094380|AC094380.6 Rattus norvegicus clone CH230-3P6, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    46  0.38  1
AC125803|AC125803.4 Rattus norvegicus clone CH230-8M13, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.38  1
AC135477|AC135477.2 Rattus norvegicus clone CH230-464B15, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces.    38  1.2  2
AC117826|AC117826.3 Mus musculus clone RP24-81K19, WORKING DRAFT SEQUENCE, 13 unordered pieces.    44  1.5  1
AC135884|AC135884.2 Rattus norvegicus clone CH230-176C2, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44  1.5  1
CA317976|CA317976.1 UI-M-FW0-cbq-o-22-0-UI.r1 NIH_BMAP_FW0 Mus musculus cDNA clone IMAGE:6813263 5', mRNA sequence.    44  1.5  1
AQ411929|AQ411929.1 CpG0915A CpIOWAgDNA1 Cryptosporidium parvum genomic, genomic survey sequence.    44  1.5  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ...   237   1e-61
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com...   144   1e-33
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...   127   1e-28
AC115604_1(AC115604|pid:none) Dictyostelium discoideum chromosom...    46   4e-04
CP001618_2965(CP001618|pid:none) Beutenbergia cavernae DSM 12333...    44   0.003
EF611243_1(EF611243|pid:none) Plum pox virus isolate Penn3 polyp...    34   1.6
S47508(S47508) genome polyprotein - plum pox virus (isolate PVV-...    33   2.8
GNVSPD(S06929;JA0078)genome polyprotein - plum pox virus (strain...    33   2.8
AY953262_1(AY953262|pid:none) Plum pox virus strain D isolate Cd...    33   3.7
EF640938_1(EF640938|pid:none) Plum pox virus isolate Penn10, com...    33   3.7

 psg: 0.75  gvh: 0.24  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SSI323 is cyt

>SSI323Z.Seq
----------GTATTGGTACAATCTGAAACCGCCTATTTTGGTTTAAAAACCCATGGTGA
CCATAATGATTTTATTTTCAAATTAACGGATTCAGAAACAATTAAAAAAGCCAGAGATAT
TTTGTCTGGAAAGGAAACCAATGAAGTTCATGTAATGGGTAGAATTAGAAAGAGACCTGA
AAGCTATAATCCAAAGTATTCCTTTATTCTTGACCCAGATACAATCACATTTTTTTCCAT
GGCTATTGAAGTTTGTGATGCTTCAACTATTTATGTAGAAGATCACCTTGATGAGGCCTG
TGGTGCTTTCCTCCCRGGTTGCTTCTGGTGCCCATGGTCTTCAAAACTAACAAGAGAAAT
TAAAATTTAAACTATAAGAGTAAAATTAAATTACTCATGATTAAATTTAATCAAATTAAA
TACTTAAATATTTAATAATAAAGTTTATTAAACAAAAGTTTTTATAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA