>SSI312 (SSI312Q) /CSM/SS/SSI3-A/SSI312Q.Seq.d/
CAGCATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCCAACACACTCGCGTGTA
AATAATCGATTAAATAAATAAAATATATATATAAATGGNGGCCGATCCGAGCTTAGTTTC
TTATGCAGACCAACATGGTGAATGGGAAACTCGTGAAATTTCAATCTTTGGTGTTGTAAA
AAGTTTTATTTCTCAATTATCAATTGGTCAAGAGTTGACAAAAGTTAGTATGCCATCAAT
TTTTTTAATGCCATATTCAATTTTAGAGTTAGCAGCATCAAGACATCTTAAATATATACA
CCTTTTAATTTCAGCCCAACACGAAGAAGATCCATTAAAAAGAATGGCAATTATTATTCA
ATACTTTTTTTCTTGTGTTAGAGATGGAAATTTCCAAAAAAACCATATAATGCATTATTA
GGAGAAGTTCATAAATGTTTTGTCAAATATCCATCATATGATGGTCAATCAACATCTACT
GCACAATTTATAGGTGAACAAGTTACACATCATCCACCATTAACAGCATTCAATATTACT
ACTTCAGAAGGAATTACTTTAGATTGTAATGTACAATTTTCAGCTAAATTCCATATGAAC
TCAGTATCAGTTGTTACAACTGGTGCAGTTAAAATTTGTATTCCAGTTAAAGTTGGTAAT
CAAATCATTAAAGAAACATATATCXXXXXXXXXX

si*kkkkkkkkkksqhtrv*iid*inkiyi*MXADPSLVSYADQHGEWETREISIFGVVK
SFISQLSIGQELTKVSMPSIFLMPYSILELAASRHLKYIHLLISAQHEEDPLKRMAIIIQ
YFFSCVRDGNFQKNHIMHY*ekfinvlsnihhmmvnqhllhnl*vnklhiihh*qhsill
lqkell*ivmynfqlnsi*tqyqllqlvqlkfvfqlklvikslkkhi---

Frame A:
qhlkkkkkkkkkkipthsrvnnrlnk*niyinggrselsflcrptw*mgns*nfnlwcck
kfyfsiinwsrvdks*yainffnaifnfrvssikts*iytpfnfsptrrrsikkngnyys
ilfflc*rwkfpkkpynallgevhkcfvkypsydgqststaqfigeqvthhppltafnit
tsegitldcnvqfsakfhmnsvsvvttgavkicipvkvgnqiikety---


Frame B:
si*kkkkkkkkkksqhtrv*iid*inkiyi*MXADPSLVSYADQHGEWETREISIFGVVK
SFISQLSIGQELTKVSMPSIFLMPYSILELAASRHLKYIHLLISAQHEEDPLKRMAIIIQ
YFFSCVRDGNFQKNHIMHY*ekfinvlsnihhmmvnqhllhnl*vnklhiihh*qhsill
lqkell*ivmynfqlnsi*tqyqllqlvqlkfvfqlklvikslkkhi---


Frame C:
afkkkkkkkkkknpntlack*sik*ikyiykwxpira*flmqtnmvngklvkfqslvl*k
vlflnyqlvks*qklvchqff*chiqf*s*qhqdilniytf*fqpntkkih*kewqllfn
tfflvlemeiskkti*ciirrss*mfcqisii*wsiniyctiyr*tsytsstinsiqyyy
frrnyfrl*ctifs*ipyelsiscynwcs*nlyss*sw*snh*rniy---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI312 (SSI312Q) /CSM/SS/SSI3-A/SSI312Q.Seq.d/                       1035   0.0
VFF842 (VFF842Q) /CSM/VF/VFF8-B/VFF842Q.Seq.d/                       1021   0.0
VFA444 (VFA444Q) /CSM/VF/VFA4-B/VFA444Q.Seq.d/                       1013   0.0
VFM332 (VFM332Q) /CSM/VF/VFM3-B/VFM332Q.Seq.d/                       1005   0.0
CFC604 (CFC604Q) /CSM/CF/CFC6-A/CFC604Q.Seq.d/                        997   0.0
AFB428 (AFB428Q) /CSM/AF/AFB4-B/AFB428Q.Seq.d/                        997   0.0
CFD144 (CFD144Q) /CSM/CF/CFD1-B/CFD144Q.Seq.d/                        989   0.0
AFI558 (AFI558Q) /CSM/AF/AFI5-C/AFI558Q.Seq.d/                        950   0.0
VFL579 (VFL579Q) /CSM/VF/VFL5-D/VFL579Q.Seq.d/                        914   0.0
VFO254 (VFO254Q) /CSM/VF/VFO2-C/VFO254Q.Seq.d/                        886   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BG227246|BG227246.1 kq04c02.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:F11C3.3 CE09349 UNC-54: MYOSIN HEAVY CHAIN ;, mRNA sequence.    52  0.009  1
BG227040|BG227040.1 kp95h10.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:F11C3.3 CE09349 UNC-54: MYOSIN HEAVY CHAIN ;, mRNA sequence.    52  0.009  1
CD390926|CD390926.1 Gm_ck0332 Soybean induced by Salicylic Acid Glycine max cDNA 3', mRNA sequence.    48  0.14  1
AC113542|AC113542.4 Mus musculus clone RP23-195A18, WORKING DRAFT SEQUENCE, 5 unordered pieces.    42  0.15  3
AC067801|AC067801.4 Homo sapiens chromosome 18, clone RP11-583B12, complete sequence.    42  1.6  4
AC024301|AC024301.10 Homo sapiens, clone RP11-686O16, complete sequence.    42  2.1  4
CC014809|CC014809.1 PUEDQ88TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa212P07, DNA sequence.    44  2.3  1
AC011498|AC011498.7 Homo sapiens chromosome 19 clone CTB-50L17, complete sequence.    38  2.6  3
AL512644|AL512644.10 Human DNA sequence from clone RP11-726B11 on chromosome 9.    32  2.8  6
AC145030|AC145030.2 Pongo pygmaeus clone CH253-494A6, WORKING DRAFT SEQUENCE, 6 ordered pieces.    34  4.4  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RM1) RecName: Full=Oxysterol-binding protein 7; AltName: Ful...   203   3e-51
AF000195_7(AF000195|pid:none) Caenorhabditis elegans cosmid C32F...    58   1e-13
AF000195_8(AF000195|pid:none) Caenorhabditis elegans cosmid C32F...    58   1e-13
AY809883_1(AY809883|pid:none) Schistosoma japonicum SJCHGC04472 ...    50   8e-12
DQ481665_2(DQ481665|pid:none) Takifugu rubripes HoxBa gene clust...    50   5e-11
FN318031_1(FN318031|pid:none) Schistosoma japonicum isolate Anhu...    47   1e-10
FN318032_1(FN318032|pid:none) Schistosoma japonicum isolate Anhu...    47   1e-10
AY051614_1(AY051614|pid:none) Drosophila melanogaster GH25973 fu...    69   2e-10
AE014297_2885(AE014297|pid:none) Drosophila melanogaster chromos...    69   2e-10
AE014297_2881(AE014297|pid:none) Drosophila melanogaster chromos...    69   2e-10

 psg: 0.75  gvh: 0.51  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SSI312 is cyt

>SSI312F.Seq
CAGCATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCCAACACACTCGCGTGTA
AATAATCGATTAAATAAATAAAATATATATATAAATGGNGGCCGATCCGAGCTTAGTTTC
TTATGCAGACCAACATGGTGAATGGGAAACTCGTGAAATTTCAATCTTTGGTGTTGTAAA
AAGTTTTATTTCTCAATTATCAATTGGTCAAGAGTTGACAAAAGTTAGTATGCCATCAAT
TTTTTTAATGCCATATTCAATTTTAGAGTTAGCAGCATCAAGACATCTTAAATATATACA
CCTTTTAATTTCAGCCCAACACGAAGAAGATCCATTAAAAAGAATGGCAATTATTATTCA
ATACTTTTTTTCTTGTGTTAGAGATGGAAATTTCCAAAAAAACCATATAATGCATTATTA
GGAGAAGTTCATAAATGTTTTGTCAAATATCCATCATATGATGGTCAATCAACATCTACT
GCACAATTTATAGGTGAACAAGTTACACATCATCCACCATTAACAGCATTCAATATTACT
ACTTCAGAAGGAATTACTTTAGATTGTAATGTACAATTTTCAGCTAAATTCCATATGAAC
TCAGTATCAGTTGTTACAACTGGTGCAGTTAAAATTTGTATTCCAGTTAAAGTTGGTAAT
CAAATCATTAAAGAAACATATATC----------