>SSI308 (SSI308Q) /CSM/SS/SSI3-A/SSI308Q.Seq.d/
AAGCAATGGTAAAAGTACAACTATAATTCAATCACCTACTCAAATTAGACCAATTTTTAA
TAATGAAAGAATGATGGTTTATGCTACTATTGAACTCGATAATGATATTTCTAATAACAT
TGAAAATCATGGTCAACCAGTAATTGTNACAATGAATGCTGATGGTCCATTAGGTGATAG
GTNATCTTATCATGTCGAATTGGATTTTAAAAATTATTCACAATCTAATAGTATTCATAC
ATTGGCTGCTTTTAAAAGAATTCAAGATTTAGAAGAAATTGAAAGAAAATCTTCAAAAGA
AACTGAAAAACTTGAAATCATCAAATTGGGTAAGAAATATAATTTGGTTTCAAAACATAC
ATCTTTAGTTGTAACTTCAGATTCTGATTCACCAACTGAAGATACAATGAAAGTTATAAA
TATTCTTCCAAATAATTCTCAACATCCAATTATTGTTGACAGATGTCATACTTTTGCTGT
TAATTTTAATTCACCACTTCAGTACCAACAACAACAACAACAACAACAACAAAATTTCAA
TAGTGGATTTGCACCACCACCACCACCAATGATGTCATCAGGACCACCACCACCCCCAGG
TTCATCTTTTGGTGCACCTCCACCTCCACCCCCAGGTGGAGCTTTCCCAACATCATCAAT
ATCAGAAAAAAAATCATCATCACAATCATCATCATCATATTTACCACCAACAATGTCATT
GTCAAGAAAATCATCATTGTCACCATCATCACCATCAAAAAATTATCCAAGCCCTAAACT
CTCAAGTCCTTCTTTATCGTATGGTTCAACTCAATCAGAAAGCACTCCATCAAATGATCC
ATTAATTTCTTTATTAGCTAAACAAAAAGCAAATGGTTCTTGGAGTAAATCATCTATTCA
AGATCAATTCTCTTCTGCTATTAGTAAAATACCAAATGAACTTTCTGCTGTTGAAGACGT
TTGGGCAACTTTATTAGTTATCTCAAAAATTATGAAAACATTTGCTTCTCAAAAATCAAA
ATGGGAACTTAGTGTTCAAAAATCAAATAAATGGGTTAAACAACAATTATTAAAATTAAA
TCTTTCTTTTGATCAATTTTTAGAACTTGCAAAATCAAATGTATAAAATTAAATTTTTAA
AATTAATTAAAATAATAAAATAATAAATATATTTAAAACAATTCAAAAAAAAAAAAAAAA
AA

SNGKSTTIIQSPTQIRPIFNNERMMVYATIELDNDISNNIENHGQPVIVTMNADGPLGDR
XSYHVELDFKNYSQSNSIHTLAAFKRIQDLEEIERKSSKETEKLEIIKLGKKYNLVSKHT
SLVVTSDSDSPTEDTMKVINILPNNSQHPIIVDRCHTFAVNFNSPLQYQQQQQQQQQNFN
SGFAPPPPPMMSSGPPPPPGSSFGAPPPPPPGGAFPTSSISEKKSSSQSSSSYLPPTMSL
SRKSSLSPSSPSKNYPSPKLSSPSLSYGSTQSESTPSNDPLISLLAKQKANGSWSKSSIQ
DQFSSAISKIPNELSAVEDVWATLLVISKIMKTFASQKSKWELSVQKSNKWVKQQLLKLN
LSFDQFLELAKSNV*n*ifkin*nnkiinifktiqkkkkk

Frame A:
kqw*kynynsitysn*tnf***kndglcyy*tr**yf**h*kswstsncxnec*wsir**
vilscrigf*klfti**ysyigcf*knsrfrrn*kkifkrn*kt*nhqig*ei*fgfkty
ifscnfrf*ftn*rynesykyssk*fstsnyc*qmsyfcc*f*fttsvpttttttttkfq
*wictttttndvirttttprfifwctststprwsfpniinirkkiiitiiiiifttnnvi
vkkiiivtiitikklskp*tlksffivwfnsirkhsik*sinffis*tkskwfle*iiys
rsilfcy**ntk*tfcc*rrlgnfisylknyenicfskikmgt*cskik*mg*ttiikik
sff*sifrtckikciklnf*n*lk**nnkyi*nnskkkkk


Frame B:
SNGKSTTIIQSPTQIRPIFNNERMMVYATIELDNDISNNIENHGQPVIVTMNADGPLGDR
XSYHVELDFKNYSQSNSIHTLAAFKRIQDLEEIERKSSKETEKLEIIKLGKKYNLVSKHT
SLVVTSDSDSPTEDTMKVINILPNNSQHPIIVDRCHTFAVNFNSPLQYQQQQQQQQQNFN
SGFAPPPPPMMSSGPPPPPGSSFGAPPPPPPGGAFPTSSISEKKSSSQSSSSYLPPTMSL
SRKSSLSPSSPSKNYPSPKLSSPSLSYGSTQSESTPSNDPLISLLAKQKANGSWSKSSIQ
DQFSSAISKIPNELSAVEDVWATLLVISKIMKTFASQKSKWELSVQKSNKWVKQQLLKLN
LSFDQFLELAKSNV*n*ifkin*nnkiinifktiqkkkkk


Frame C:
amvkvql*fnhllkldqflimke*wfmlllnsimiflitlkimvnq*lxq*mlmvh*vig
xlimsnwilkiihnlivfihwlllkefki*kklkenlqkklknlkssnwvrniiwfqnih
l*l*lqilihqlkiq*kl*iffqiilniqllltdvillllilihhfstnnnnnnnnkisi
vdlhhhhhq*chqdhhhpqvhllvhlhlhpqvelsqhhqyqkknhhhnhhhhiyhqqchc
qenhhchhhhhqkiiqalnsqvllyrmvqlnqkalhqmih*fly*lnkkqmvlgvnhlfk
insllllvkyqmnflllktfgqly*lsqkl*khlllknqngnlvfknqinglnnny*n*i
fllinf*nlqnqmykikflklikiik**iylkqfkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO312 (VHO312Q) /CSM/VH/VHO3-A/VHO312Q.Seq.d/                        829   0.0
SSI308 (SSI308Q) /CSM/SS/SSI3-A/SSI308Q.Seq.d/                        829   0.0
SHK279 (SHK279Q) /CSM/SH/SHK2-D/SHK279Q.Seq.d/                        829   0.0
SHH226 (SHH226Q) /CSM/SH/SHH2-B/SHH226Q.Seq.d/                        829   0.0
SHE555 (SHE555Q) /CSM/SH/SHE5-C/SHE555Q.Seq.d/                        829   0.0
SHC765 (SHC765Q) /CSM/SH/SHC7-C/SHC765Q.Seq.d/                        829   0.0
SFJ827 (SFJ827Q) /CSM/SF/SFJ8-B/SFJ827Q.Seq.d/                        829   0.0
CHG479 (CHG479Q) /CSM/CH/CHG4-D/CHG479Q.Seq.d/                        829   0.0
VHG755 (VHG755Q) /CSM/VH/VHG7-C/VHG755Q.Seq.d/                        821   0.0
SHK261 (SHK261Q) /CSM/SH/SHK2-C/SHK261Q.Seq.d/                        813   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    44  5e-05  10
AL928685|AL928685.7 Zebrafish DNA sequence from clone CH211-139G14.    40  0.002  8
BF551843|BF551843.1 UI-R-Y0-lt-c-09-0-UI.r1 UI-R-Y0 Rattus norvegicus cDNA clone UI-R-Y0-lt-c-09-0-UI 5', mRNA sequence.    54  0.004  1
AF482397|AF482397.1 Dictyostelium discoideum ABC transporter AbcG20 (abcG20) gene, complete cds.    40  0.013  3
AC108690|AC108690.4 Homo sapiens 3 BAC RP11-783N9 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    50  0.064  1
T81148|T81148.1 yd24e03.r1 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone IMAGE:109180 5' similar to contains MSR1 repetitive element ;, mRNA sequence.    50  0.064  1
X59829|X59829.1 Human chromosome 9 flanking hypervariable simple repeat DNA (clone HZREP41).    50  0.064  1
T81149|T81149.1 yd24e04.r1 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone IMAGE:109182 5' similar to contains MSR1 repetitive element ;, mRNA sequence.    50  0.064  1
AP004550|AP004550.2 Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-60D22.    50  0.064  1
BX110315|BX110315.1 RZPD Homo sapiens cDNA clone IMAGp998K0581 = IMAGE:109180 5' EST.    50  0.064  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC081656_1(BC081656|pid:none) Danio rerio zgc:92481, mRNA (cDNA ...    42   0.057
(Q9UKK3) RecName: Full=Poly [ADP-ribose] polymerase 4;          ...    41   0.097
AF057160_1(AF057160|pid:none) Homo sapiens putative poly(ADP-rib...    41   0.097
AB384443_1(AB384443|pid:none) Synthetic construct DNA, clone: pF...    40   0.13
BC080948_1(BC080948|pid:none) Xenopus tropicalis loh11cr2a prote...    40   0.17
AM746676_2133(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    39   0.48
CP001407_472(CP001407|pid:none) Bacillus cereus 03BB102, complet...    39   0.48
BC038799_1(BC038799|pid:none) Homo sapiens protocadherin 21, mRN...    38   0.63
CP001634_414(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, co...    38   0.63
AB053448_1(AB053448|pid:none) Homo sapiens mRNA for KIAA1775 pro...    38   0.63

 psg: 0.82  gvh: 0.44  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for SSI308 is cyt

>SSI308F.Seq
AAGCAATGGTAAAAGTACAACTATAATTCAATCACCTACTCAAATTAGACCAATTTTTAA
TAATGAAAGAATGATGGTTTATGCTACTATTGAACTCGATAATGATATTTCTAATAACAT
TGAAAATCATGGTCAACCAGTAATTGTNACAATGAATGCTGATGGTCCATTAGGTGATAG
GTNATCTTATCATGTCGAATTGGATTTTAAAAATTATTCACAATCTAATAGTATTCATAC
ATTGGCTGCTTTTAAAAGAATTCAAGATTTAGAAGAAATTGAAAGAAAATCTTCAAAAGA
AACTGAAAAACTTGAAATCATCAAATTGGGTAAGAAATATAATTTGGTTTCAAAACATAC
ATCTTTAGTTGTAACTTCAGATTCTGATTCACCAACTGAAGATACAATGAAAGTTATAAA
TATTCTTCCAAATAATTCTCAACATCCAATTATTGTTGACAGATGTCATACTTTTGCTGT
TAATTTTAATTCACCACTTCAGTACCAACAACAACAACAACAACAACAACAAAATTTCAA
TAGTGGATTTGCACCACCACCACCACCAATGATGTCATCAGGACCACCACCACCCCCAGG
TTCATCTTTTGGTGCACCTCCACCTCCACCCCCAGGTGGAGCTTTCCCAACATCATCAAT
ATCAGAAAAAAAATCATCATCACAATCATCATCATCATATTTACCACCAACAATG-----
-----

>SSI308Z.Seq
----------AAAATCATCATCACAATCATCATCATCATATTTACCACCAACAATGTCAT
TGTCAAGAAAATCATCATTGTCACCATCATCACCATCAAAAAATTATCCAAGCCCTAAAC
TCTCAAGTCCTTCTTTATCGTATGGTTCAACTCAATCAGAAAGCACTCCATCAAATGATC
CATTAATTTCTTTATTAGCTAAACAAAAAGCAAATGGTTCTTGGAGTAAATCATCTATTC
AAGATCAATTCTCTTCTGCTATTAGTAAAATACCAAATGAACTTTCTGCTGTTGAAGACG
TTTGGGCAACTTTATTAGTTATCTCAAAAATTATGAAAACATTTGCTTCTCAAAAATCAA
AATGGGAACTTAGTGTTCAAAAATCAAATAAATGGGTTAAACAACAATTATTAAAATTAA
ATCTTTCTTTTGATCAATTTTTAGAACTTGCAAAATCAAATGTATAAAATTAAATTTTTA
AAATTAATTAAAATAATAAAATAATAAATATATTTAAAACAATTCAAAAAAAAAAAAAAA
AAA

>SSI308P.Seq
AAGCAATGGTAAAAGTACAACTATAATTCAATCACCTACTCAAATTAGACCAATTTTTAA
TAATGAAAGAATGATGGTTTATGCTACTATTGAACTCGATAATGATATTTCTAATAACAT
TGAAAATCATGGTCAACCAGTAATTGTNACAATGAATGCTGATGGTCCATTAGGTGATAG
GTNATCTTATCATGTCGAATTGGATTTTAAAAATTATTCACAATCTAATAGTATTCATAC
ATTGGCTGCTTTTAAAAGAATTCAAGATTTAGAAGAAATTGAAAGAAAATCTTCAAAAGA
AACTGAAAAACTTGAAATCATCAAATTGGGTAAGAAATATAATTTGGTTTCAAAACATAC
ATCTTTAGTTGTAACTTCAGATTCTGATTCACCAACTGAAGATACAATGAAAGTTATAAA
TATTCTTCCAAATAATTCTCAACATCCAATTATTGTTGACAGATGTCATACTTTTGCTGT
TAATTTTAATTCACCACTTCAGTACCAACAACAACAACAACAACAACAACAAAATTTCAA
TAGTGGATTTGCACCACCACCACCACCAATGATGTCATCAGGACCACCACCACCCCCAGG
TTCATCTTTTGGTGCACCTCCACCTCCACCCCCAGGTGGAGCTTTCCCAACATCATCAAT
ATCAGAAAAAAAATCATCATCACAATCATCATCATCATATTTACCACCAACAATG-----
-----AAAATCATCATCACAATCATCATCATCATATTTACCACCAACAATGTCATTGTCA
AGAAAATCATCATTGTCACCATCATCACCATCAAAAAATTATCCAAGCCCTAAACTCTCA
AGTCCTTCTTTATCGTATGGTTCAACTCAATCAGAAAGCACTCCATCAAATGATCCATTA
ATTTCTTTATTAGCTAAACAAAAAGCAAATGGTTCTTGGAGTAAATCATCTATTCAAGAT
CAATTCTCTTCTGCTATTAGTAAAATACCAAATGAACTTTCTGCTGTTGAAGACGTTTGG
GCAACTTTATTAGTTATCTCAAAAATTATGAAAACATTTGCTTCTCAAAAATCAAAATGG
GAACTTAGTGTTCAAAAATCAAATAAATGGGTTAAACAACAATTATTAAAATTAAATCTT
TCTTTTGATCAATTTTTAGAACTTGCAAAATCAAATGTATAAAATTAAATTTTTAAAATT
AATTAAAATAATAAAATAATAAATATATTTAAAACAATTCAAAAAAAAAAAAAAAAAA

>SSI308E.Seq
AAGCAATGGTAAAAGTACAACTATAATTCAATCACCTACTCAAATTAGACCAATTTTTAA
TAATGAAAGAATGATGGTTTATGCTACTATTGAACTCGATAATGATATTTCTAATAACAT
TGAAAATCATGGTCAACCAGTAATTGTNACAATGAATGCTGATGGTCCATTAGGTGATAG
GTNATCTTATCATGTCGAATTGGATTTTAAAAATTATTCACAATCTAATAGTATTCATAC
ATTGGCTGCTTTTAAAAGAATTCAAGATTTAGAAGAAATTGAAAGAAAATCTTCAAAAGA
AACTGAAAAACTTGAAATCATCAAATTGGGTAAGAAATATAATTTGGTTTCAAAACATAC
ATCTTTAGTTGTAACTTCAGATTCTGATTCACCAACTGAAGATACAATGAAAGTTATAAA
TATTCTTCCAAATAATTCTCAACATCCAATTATTGTTGACAGATGTCATACTTTTGCTGT
TAATTTTAATTCACCACTTCAGTACCAACAACAACAACAACAACAACAACAAAATTTCAA
TAGTGGATTTGCACCACCACCACCACCAATGATGTCATCAGGACCACCACCACCCCCAGG
TTCATCTTTTGGTGCACCTCCACCTCCACCCCCAGGTGGAGCTTTCCCAACATCATCAAT
ATCAGAAAAAAAATCATCATCACAATCATCATCATCATATTTACCACCAACAATGTCATT
GTCAAGAAAATCATCATTGTCACCATCATCACCATCAAAAAATTATCCAAGCCCTAAACT
CTCAAGTCCTTCTTTATCGTATGGTTCAACTCAATCAGAAAGCACTCCATCAAATGATCC
ATTAATTTCTTTATTAGCTAAACAAAAAGCAAATGGTTCTTGGAGTAAATCATCTATTCA
AGATCAATTCTCTTCTGCTATTAGTAAAATACCAAATGAACTTTCTGCTGTTGAAGACGT
TTGGGCAACTTTATTAGTTATCTCAAAAATTATGAAAACATTTGCTTCTCAAAAATCAAA
ATGGGAACTTAGTGTTCAAAAATCAAATAAATGGGTTAAACAACAATTATTAAAATTAAA
TCTTTCTTTTGATCAATTTTTAGAACTTGCAAAATCAAATGTATAAAATTAAATTTTTAA
AATTAATTAAAATAATAAAATAATAAATATATTTAAAACAATTCAAAAAAAAAAAAAAAA
AA