>SSI301 (SSI301Q) /CSM/SS/SSI3-A/SSI301Q.Seq.d/
GTCCTGGTCAAATTTTCTTGGAAAAAGTTCCAGATGCTGATGATATTATTCATTTCGAAG
AGGCTGAAACTACAACTACCACTACTACCACTACAACTGAAACTACAAATGAAAATGAAA
AAGAAACTGAAACTGAACAAGAAAAAGAACAAGAAAAAGAACAAGAAAAAGAAAAAGAAC
AAGAAAAAGAACAAGAAAAAGAAAAAGAACAAGAAAAAGAGGTAGAAAAAGAGGTAGAAA
AAGATATCGAAAAAAAAGAATAAAAATATTTAATTTTAATTTAAAAAATAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAXXXXXXXXXX

PGQIFLEKVPDADDIIHFEEAETTTTTTTTTTETTNENEKETETEQEKEQEKEQEKEKEQ
EKEQEKEKEQEKEVEKEVEKDIEKKE*kylili*kikkkkkkkkkkkkkkkkkkkkkkkk
k---

Frame A:
vlvkfswkkfqmlmilfiskrlklqlpllplqlklqmkmkkklklnkkknkkknkkkkkn
kkknkkkkknkkkr*kkr*kkiskkknkni*f*fkk*kkkkkkkkkkkkkkkkkkkkkkk
kk---


Frame B:
swsnflgkssrc**yysfrrg*nynyhyyhyn*nyk*k*krn*n*trkrtrkrtrkrkrt
rkrtrkrkrtrkrgrkrgrkryrkkrikifnfnlknkkkkkkkkkkkkkkkkkkkkkkkk
kk---


Frame C:
PGQIFLEKVPDADDIIHFEEAETTTTTTTTTTETTNENEKETETEQEKEQEKEQEKEKEQ
EKEQEKEKEQEKEVEKEVEKDIEKKE*kylili*kikkkkkkkkkkkkkkkkkkkkkkkk
k---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ431 (SSJ431Q) /CSM/SS/SSJ4-B/SSJ431Q.Seq.d/                        127   1e-28
SSI301 (SSI301Q) /CSM/SS/SSI3-A/SSI301Q.Seq.d/                        127   1e-28
SFA850 (SFA850Q) /CSM/SF/SFA8-C/SFA850Q.Seq.d/                        127   1e-28
SFA568 (SFA568Q) /CSM/SF/SFA5-C/SFA568Q.Seq.d/                        127   1e-28
CHI277 (CHI277Q) /CSM/CH/CHI2-D/CHI277Q.Seq.d/                        127   1e-28
AHA358 (AHA358Q) /CSM/AH/AHA3-C/AHA358Q.Seq.d/                         36   0.37
CHL853 (CHL853Q) /CSM/CH/CHL8-C/CHL853Q.Seq.d/                         32   5.7
CHH465 (CHH465Q) /CSM/CH/CHH4-C/CHH465Q.Seq.d/                         32   5.7
CHG728 (CHG728Q) /CSM/CH/CHG7-B/CHG728Q.Seq.d/                         32   5.7
CHG426 (CHG426Q) /CSM/CH/CHG4-B/CHG426Q.Seq.d/                         32   5.7

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL669957|AL669957.2 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-334B13.    40     19  1
AC128010|AC128010.3 Rattus norvegicus clone CH230-404E22, WORKING DRAFT SEQUENCE, 1 ordered piece.    40     19  1
AC111659|AC111659.5 Rattus norvegicus clone CH230-130H21, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    40     19  1
AC040907|AC040907.3 Homo sapiens chromosome 6 clone RP11-186A7 map 6, WORKING DRAFT SEQUENCE, 25 unordered pieces.    40     19  1
AY266269|AY266269.1 Corynebacterium jeikeium plasmid pA501, complete sequence.    40     19  1
BU256088|BU256088.1 603744272F1 CSEQCHN38 Gallus gallus cDNA clone ChEST646p18 5', mRNA sequence.    40     19  1
AL590083|AL590083.8 Human DNA sequence from clone RP11-475D8 on chromosome X Contains a  novel transcript, the GPR23 gene for G protein-coupled receptor 23  and a pseudogene similar to ribosomal protein L7.    40     19  1
BQ313757|BQ313757.1 RC2-BN0332-090700-014-d11 BN0332 Homo sapiens cDNA, mRNA sequence.    40     19  1
BU424771|BU424771.1 603955671F1 CSEQRBN09 Gallus gallus cDNA clone ChEST922n17 5', mRNA sequence.    40     19  1
BU230865|BU230865.1 603800230F1 CSEQCHN23 Gallus gallus cDNA clone ChEST770l8 5', mRNA sequence.    40     19  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 106,344,640

 psg: 0.75  gvh: 0.21  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 44.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SSI301 is nuc

>SSI301F.Seq
GTCCTGGTCAAATTTTCTTGGAAAAAGTTCCAGATGCTGATGATATTATTCATTTCGAAG
AGGCTGAAACTACAACTACCACTACTACCACTACAACTGAAACTACAAATGAAAATGAAA
AAGAAACTGAAACTGAACAAGAAAAAGAACAAGAAAAAGAACAAGAAAAAGAAAAAGAAC
AAGAAAAAGAACAAGAAAAAGAAAAAGAACAAGAAAAAGAGGTAGAAAAAGAGGTAGAAA
AAGATATCGAAAAAAAAGAATAAAAATATTTAATTTTAATTTAAAAAATAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA