>SSI293 (SSI293Q) /CSM/SS/SSI2-D/SSI293Q.Seq.d/
XXXXXXXXXXATATATAAATATAATATTAAAAAAAATGATTGGGAAATAGAATTAGGTAA
TTTACCAGGAAGTTCATCAAAATTTGAAAATCAAAAACCAAACTTCTTATATAAAACAAT
TGTAGACCCTCTATCATTTGTTGCATTAAAATTTGAAATTAATGATAATGAAAAGAAAGA
CGTTAAAATCAGTTGTAATGGTGGTACAAGTCATTGGACATTCAAAGATAAATTTGGTGA
TATTAAACCAGACGATGTAATTAGTCATAATTATGTTAGTAAAACATATTGTGCAAGTGA
TAATTTTGCTCCATATTTCTGGAACTTCACTTGTGAAAATCAAGTTTTTCCATGCTCCGT
ATCTGCAAGAATTGATTTTGGAAATATGAAAGGTTGTTAAATGATAAATTAAACCAACTA
TCATTTGTTCATAATCAATATAAAAGGAATAACACTTTATTCAA

---YKYNIKKNDWEIELGNLPGSSSKFENQKPNFLYKTIVDPLSFVALKFEINDNEKKDV
KISCNGGTSHWTFKDKFGDIKPDDVISHNYVSKTYCASDNFAPYFWNFTCENQVFPCSVS
ARIDFGNMKGC*min*tnyhlfiinikgitlys

Frame A:
---yiniilkkmigk*n*viyqevhqnlkiknqtsyikql*tlyhllh*nlklmimkrkt
lksvvmvvqvighskinlvilnqtm*lviimlvkhivqviillhisgtslvkikffhapy
lqelilei*kvvk**ikptiics*si*ke*hfiq


Frame B:
---i*i*y*kk*lgnrir*ftrkfiki*ksktklli*nncrpsiicciki*n****kerr
*nql*wwyksldiqr*iw*y*trrcn*s*lc**nilck**fcsiflelhl*kssfsmlri
ckn*fwkyerllndklnqlsfvhnqykrnntlf


Frame C:
---YKYNIKKNDWEIELGNLPGSSSKFENQKPNFLYKTIVDPLSFVALKFEINDNEKKDV
KISCNGGTSHWTFKDKFGDIKPDDVISHNYVSKTYCASDNFAPYFWNFTCENQVFPCSVS
ARIDFGNMKGC*min*tnyhlfiinikgitlys

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL102 (SSL102Q) /CSM/SS/SSL1-A/SSL102Q.Seq.d/                        852   0.0
SSI293 (SSI293Q) /CSM/SS/SSI2-D/SSI293Q.Seq.d/                        852   0.0
SSC279 (SSC279Q) /CSM/SS/SSC2-D/SSC279Q.Seq.d/                        848   0.0
SSH344 (SSH344Q) /CSM/SS/SSH3-B/SSH344Q.Seq.d/                        751   0.0
SSK560 (SSK560Q) /CSM/SS/SSK5-C/SSK560Q.Seq.d/                        674   0.0
SSF524 (SSF524Q) /CSM/SS/SSF5-A/SSF524Q.Seq.d/                        523   e-148
SSE615 (SSE615Q) /CSM/SS/SSE6-A/SSE615Q.Seq.d/                         42   0.007
AHI787 (AHI787Q) /CSM/AH/AHI7-D/AHI787Q.Seq.d/                         38   0.11
SSL510 (SSL510Q) /CSM/SS/SSL5-A/SSL510Q.Seq.d/                         36   0.45
SSI484 (SSI484Q) /CSM/SS/SSI4-D/SSI484Q.Seq.d/                         36   0.45

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC096490|AC096490.7 Rattus norvegicus clone CH230-130J24, WORKING DRAFT SEQUENCE, 3 unordered pieces.    40  0.019  4
AC120624|AC120624.4 Rattus norvegicus clone CH230-25E7, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38  0.032  8
BZ437197|BZ437197.1 BONJC37TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONJC37, DNA sequence.    48  0.095  1
BH674264|BH674264.1 BOMNA40TF BO_2_3_KB Brassica oleracea genomic clone BOMNA40, DNA sequence.    48  0.095  1
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           36  0.13  7
AC137670|AC137670.5 Medicago truncatula clone mth2-14g3, WORKING DRAFT SEQUENCE, 15 unordered pieces.    36  0.13  10
AC141818|AC141818.1 Apis mellifera clone CH224-62B21, *** SEQUENCING IN PROGRESS ***, 47 unordered pieces.    36  0.23  3
AC024772|AC024772.1 Caenorhabditis elegans cosmid Y40C5A, complete sequence.    38  0.31  5
AZ691123|AZ691123.1 ENTMW79TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38  0.33  2
AE014850|AE014850.1 Plasmodium falciparum 3D7 chromosome 12, section 7 of 9 of the complete sequence.    34  0.37  8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000316_3886(CP000316|pid:none) Polaromonas sp. JS666, complete...    39   0.055
CP000379_339(CP000379|pid:none) Burkholderia cenocepacia AU 1054...    35   1.0
CP001053_2830(CP001053|pid:none) Burkholderia phytofirmans PsJN ...    35   1.0
CP000271_71(CP000271|pid:none) Burkholderia xenovorans LB400 chr...    35   1.0
CP001026_1839(CP001026|pid:none) Burkholderia ambifaria MC40-6 c...    34   1.8
AM747721_2291(AM747721|pid:none) Burkholderia cenocepacia J2315 ...    34   1.8
AE008917_1707(AE008917|pid:none) Brucella melitensis 16M chromos...    33   2.3
CP001488_225(CP001488|pid:none) Brucella melitensis ATCC 23457 c...    33   2.3
CP000708_221(CP000708|pid:none) Brucella ovis ATCC 25840 chromos...    33   2.3
CP000749_855(CP000749|pid:none) Marinomonas sp. MWYL1, complete ...    33   3.0

 psg: 0.73  gvh: 0.48  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: mitochondrial

>> prediction for SSI293 is cyt

>SSI293Z.Seq
----------ATATATAAATATAATATTAAAAAAAATGATTGGGAAATAGAATTAGGTAA
TTTACCAGGAAGTTCATCAAAATTTGAAAATCAAAAACCAAACTTCTTATATAAAACAAT
TGTAGACCCTCTATCATTTGTTGCATTAAAATTTGAAATTAATGATAATGAAAAGAAAGA
CGTTAAAATCAGTTGTAATGGTGGTACAAGTCATTGGACATTCAAAGATAAATTTGGTGA
TATTAAACCAGACGATGTAATTAGTCATAATTATGTTAGTAAAACATATTGTGCAAGTGA
TAATTTTGCTCCATATTTCTGGAACTTCACTTGTGAAAATCAAGTTTTTCCATGCTCCGT
ATCTGCAAGAATTGATTTTGGAAATATGAAAGGTTGTTAAATGATAAATTAAACCAACTA
TCATTTGTTCATAATCAATATAAAAGGAATAACACTTTATTCAA