SSI291
Library SS
(Link to library)
Clone ID SSI291
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16504-1
Original site URL
Representative seq. ID SSI291Z
(Link to Original site)
Representative DNA sequence
>SSI291 (SSI291Q) /CSM/SS/SSI2-D/SSI291Q.Seq.d/
XXXXXXXXXXAGAATCCACCAGATCCATTGTATTTATTAAAATGCCATCTTCAAAAGCTT
GTTCAAAGTCAGTTAAAACTTTACTATGAAAATGAAGGTTATAAGGATATTCCAGTATGG
ATTACACCATGTTCAGCATTTATGAGATACATTAAATCGTATCCAATTGTTGGAACTGTA
ACAGAGACAATGGAAAAGAAAAAAGGTTTCACCAATAGATTCTTATCAACTAGTGAAACC
AAAGCATCAGTTTCAGTCGGATTCTTTGGTTGTGAATCATCGATGGAAGTTACAAGTGGT
TATGAATATGAAGACACTGTTACATCTGAAGAAACTAGAAGTTGGAGTCAAACTTTAAAT
GAAGGTTCTTATATTGTTTATCAAAACGTTTTAGTTTATGCTTATATAATCTATGGTGGT
AGTTATAAACCATACATTGATCAAATGAATAAATTTAATCCTGGATTAAATATCAAATTC
TTTAGAGAAGATAAATGTATCTTTTTTGTACCAATTAATCGTGATGATGCCTTCACTCTT
CGTTATCAAGATAATACATGGGATCCAGTTGAATATGATGTTTTAATTGATTACTTGGGT
CAAAATCAAGATAAATGGTTTTCTGGTGGTTTACCANTNNNNAAATAATAATAATAATAA
TAATAATTATATAAATTACATAAAGGTTTCACTATTGGTGTTTTAATCCTGGTATAAATA
AAATTCTAAAAATAAAAAAAAAAAAAAAAA
sequence update 1997.12.31
Translated Amino Acid sequence
---NPPDPLYLLKCHLQKLVQSQLKLYYENEGYKDIPVWITPCSAFMRYIKSYPIVGTVT
ETMEKKKGFTNRFLSTSETKASVSVGFFGCESSMEVTSGYEYEDTVTSEETRSWSQTLNE
GSYIVYQNVLVYAYIIYGGSYKPYIDQMNKFNPGLNIKFFREDKCIFFVPINRDDAFTLR
YQDNTWDPVEYDVLIDYLGQNQDKWFSGGLPXXK*******lyklhkgftigvlilv*ik
f*k*kkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---estrsivfikmpsskacsksvktll*k*rl*gyssmdytmfsiyeih*ivsncwncn
rdngkekrfhq*ilin**nqsisfsrilwl*iidgsykwl*i*rhcyi*rn*klesnfk*
rflyclskrfslclynlww*l*tih*sne*i*swikyqil*rr*mylfctn*s**clhss
lsr*ymgss*i*cfn*llgsksr*mvfwwftxxxiiiiiiiii*it*rfhywcfnpgink
ilkikkkkk


Frame B:
---NPPDPLYLLKCHLQKLVQSQLKLYYENEGYKDIPVWITPCSAFMRYIKSYPIVGTVT
ETMEKKKGFTNRFLSTSETKASVSVGFFGCESSMEVTSGYEYEDTVTSEETRSWSQTLNE
GSYIVYQNVLVYAYIIYGGSYKPYIDQMNKFNPGLNIKFFREDKCIFFVPINRDDAFTLR
YQDNTWDPVEYDVLIDYLGQNQDKWFSGGLPXXK*******lyklhkgftigvlilv*ik
f*k*kkkkk


Frame C:
---ihqihciy*naifkslfkvs*nftmkmkvirifqyglhhvqhl*dtlnriqllel*q
rqwkrkkvspidsyqlvkpkhqfqsdslvvnhrwklqvvmnmktllhlkklevgvkl*mk
vlilfiktf*fmli*smvvvinhtlik*inlild*isnslekinvsflyqlivmmpslfv
ikiihgiqlnmmf*litwvkikingflvvyxxxnnnnnnnnyinyikvsllvf*swyk*n
sknkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSI291 (SSI291Q) /CSM/SS/SSI2-D/SSI291Q.Seq.d/ 1241 0.0
VSJ730 (VSJ730Q) /CSM/VS/VSJ7-B/VSJ730Q.Seq.d/ 1211 0.0
VSD543 (VSD543Q) /CSM/VS/VSD5-B/VSD543Q.Seq.d/ 1211 0.0
VHB403 (VHB403Q) /CSM/VH/VHB4-A/VHB403Q.Seq.d/ 1211 0.0
VFJ763 (VFJ763Q) /CSM/VF/VFJ7-C/VFJ763Q.Seq.d/ 1211 0.0
VFI758 (VFI758Q) /CSM/VF/VFI7-C/VFI758Q.Seq.d/ 1211 0.0
VFI142 (VFI142Q) /CSM/VF/VFI1-B/VFI142Q.Seq.d/ 1211 0.0
VFC716 (VFC716Q) /CSM/VF/VFC7-A/VFC716Q.Seq.d/ 1211 0.0
VSI168 (VSI168Q) /CSM/VS/VSI1-C/VSI168Q.Seq.d/ 1203 0.0
VHP648 (VHP648Q) /CSM/VH/VHP6-B/VHP648Q.Seq.d/ 1203 0.0

own update 2002.12.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U48706|U48706.1 Dictyostelium discoideum small aggregate formation (smlA) gene, complete cds. 1156 0.0 4
X94341|X94341.1 D.discoideum mRNA for unknown protein with homology to spore germination protein. 86 4e-47 7
M19469|M19469.1 Dictyostelium discoideum 109 gene 3, complete cds. 56 1e-07 2
AC116158|AC116158.5 Homo sapiens chromosome , clone RP11-102L12, complete sequence. 44 0.23 6
CA930567|CA930567.1 MTU4CA.P24.B01 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence. 34 0.46 2
CA930485|CA930485.1 MTU4CA.P23.B04 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence. 34 0.46 2
CA930468|CA930468.1 MTU4CA.P22.H11 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence. 34 0.46 2
CA930577|CA930577.1 MTU4CA.P24.B11 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence. 34 0.46 2
AC084502|AC084502.1 Caenorhabditis briggsae cosmid G14F21, complete sequence. 44 0.50 2
AC110380|AC110380.4 Mus musculus clone RP24-194P24, complete sequence. 38 1.6 3
dna update 2003. 7.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116330_42(AC116330|pid:none) Dictyostelium discoideum chromoso... 49 2e-04
CP000712_1048(CP000712|pid:none) Pseudomonas putida F1, complete... 42 0.016
AC116330_41(AC116330|pid:none) Dictyostelium discoideum chromoso... 42 0.020
CP001083_1669(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 38 0.38
DQ790236_1(DQ790236|pid:none) Champereia manillana acetyl co-A c... 37 0.50
DQ790237_1(DQ790237|pid:none) Agonandra macrocarpa acetyl co-A c... 37 0.85
AE001362_167(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 37 0.85
AY332625_22(AY332625|pid:none) Campylobacter jejuni serotype HS:... 35 1.9
CP000932_787(CP000932|pid:none) Campylobacter lari RM2100, compl... 35 3.2
BX545858_22(BX545858|pid:none) Campylobacter jejuni. 35 3.2
protein update 2009. 6.13
PSORT

psg: 0.65 gvh: 0.46 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
20.0 %: mitochondrial
16.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for SSI291 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI291Z
3' end seq.
>SSI291Z.Seq
----------AGAATCCACCAGATCCATTGTATTTATTAAAATGCCATCTTCAAAAGCTT
GTTCAAAGTCAGTTAAAACTTTACTATGAAAATGAAGGTTATAAGGATATTCCAGTATGG
ATTACACCATGTTCAGCATTTATGAGATACATTAAATCGTATCCAATTGTTGGAACTGTA
ACAGAGACAATGGAAAAGAAAAAAGGTTTCACCAATAGATTCTTATCAACTAGTGAAACC
AAAGCATCAGTTTCAGTCGGATTCTTTGGTTGTGAATCATCGATGGAAGTTACAAGTGGT
TATGAATATGAAGACACTGTTACATCTGAAGAAACTAGAAGTTGGAGTCAAACTTTAAAT
GAAGGTTCTTATATTGTTTATCAAAACGTTTTAGTTTATGCTTATATAATCTATGGTGGT
AGTTATAAACCATACATTGATCAAATGAATAAATTTAATCCTGGATTAAATATCAAATTC
TTTAGAGAAGATAAATGTATCTTTTTTGTACCAATTAATCGTGATGATGCCTTCACTCTT
CGTTATCAAGATAATACATGGGATCCAGTTGAATATGATGTTTTAATTGATTACTTGGGT
CAAAATCAAGATAAATGGTTTTCTGGTGGTTTACCANTNNNNAAATAATAATAATAATAA
TAATAATTATATAAATTACATAAAGGTTTCACTATTGGTGTTTTAATCCTGGTATAAATA
AAATTCTAAAAATAAAAAAAAAAAAAAAAA
Length of 3' end seq. 740
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -