>SSI272 (SSI272Q) /CSM/SS/SSI2-C/SSI272Q.Seq.d/
ATTTATTTCACTTTATTTGTACTTTTACTTTTGTATTACAAAATGAGATTCATTTTAGTT
TTAGTTTTAATTTTGGGCTTAGTCTCATCATCATTTGGTATCAATGTTGACAAGAATGAA
GTATCTCAAACCGAATTACAATCAGCTCGTGACTTTAGTTCATTCGCTATCGGCTTTGCA
GAGGGTATTGAAATTAGTTTGACTGGTAATCTTCATAAATGTGTTGCTGCAGCCGAATCA
AGTTTCAGTGAATTCTCAAATTCCTTCCATTTAATTGATAGTGGTTTGAAACATAAATCA
TTAGGTGATGCAAAGAGTGGTCTCCGTGATTTTGGTATTGGTTTAGTTGATTTGGTCAAA
ACCTACCAAAGATGTGGTGTTGGAAAATTCATTAGTGAAATCTCTGCCATTTCAAAAGAA
GTTACCAACGAAACTGGTATCATCAAACTCATTATTCATGAAGTCATCGATATTTTCCAC
AACTCCCACAGTTTAACTTCCGATTTCAAATCCGCCATTTCAGATTGTGGTCGTGGTGAT
TACACTGGTTGTGGTGTTGCAAGTGGAAAAATTGTCGGAATTTTAATGAGACAATAAATT
ATCAATTCATCCCCTATCCCTTTCCAAAAAGGGATCAGCTAAAAAAAAAAAAAAA

IYFTLFVLLLLYYKMRFILVLVLILGLVSSSFGINVDKNEVSQTELQSARDFSSFAIGFA
EGIEISLTGNLHKCVAAAESSFSEFSNSFHLIDSGLKHKSLGDAKSGLRDFGIGLVDLVK
TYQRCGVGKFISEISAISKEVTNETGIIKLIIHEVIDIFHNSHSLTSDFKSAISDCGRGD
YTGCGVASGKIVGILMRQ*iinsspipfqkgis*kkkk

Frame A:
IYFTLFVLLLLYYKMRFILVLVLILGLVSSSFGINVDKNEVSQTELQSARDFSSFAIGFA
EGIEISLTGNLHKCVAAAESSFSEFSNSFHLIDSGLKHKSLGDAKSGLRDFGIGLVDLVK
TYQRCGVGKFISEISAISKEVTNETGIIKLIIHEVIDIFHNSHSLTSDFKSAISDCGRGD
YTGCGVASGKIVGILMRQ*iinsspipfqkgis*kkkk


Frame B:
fislylyfyfcitk*dsf*f*f*fwa*shhhlvsmltrmkylkpnynqlvtlvhslsalq
rvlklv*lvifinvllqpnqvsvnsqipsi*livv*ninh*vmqrvvsvilvlv*liwsk
ptkdvvlenslvkslpfqkklptklvssnslfmkssifsttptv*lpisnppfqivvvvi
tlvvvlqveklsef**dnklsihplslskkgsakkkkk


Frame C:
lfhfictftfvlqneihfsfsfnfglsliiiwyqc*qe*sisnritiss*l*firyrlcr
gy*n*fdw*ss*mcccsrikfq*ilkflpfn**wfet*iir*ckewsp*fwywfs*fgqn
lpkmwcwkih**nlchfkrsyqrnwyhqthys*shryfpqlpqfnfrfqirhfrlwsw*l
hwlwcckwkncrnfnetinyqfipypfpkrdqlkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI272 (SSI272Q) /CSM/SS/SSI2-C/SSI272Q.Seq.d/                       1269   0.0
VHJ638 (VHJ638Q) /CSM/VH/VHJ6-B/VHJ638Q.Seq.d/                       1231   0.0
VSH863 (VSH863Q) /CSM/VS/VSH8-C/VSH863Q.Seq.d/                       1219   0.0
VSD240 (VSD240Q) /CSM/VS/VSD2-B/VSD240Q.Seq.d/                       1211   0.0
VSF681 (VSF681Q) /CSM/VS/VSF6-D/VSF681Q.Seq.d/                       1170   0.0
SSF481 (SSF481Q) /CSM/SS/SSF4-D/SSF481Q.Seq.d/                       1156   0.0
VSI479 (VSI479Q) /CSM/VS/VSI4-D/VSI479Q.Seq.d/                       1152   0.0
VSF110 (VSF110Q) /CSM/VS/VSF1-A/VSF110Q.Seq.d/                       1142   0.0
VSI305 (VSI305Q) /CSM/VS/VSI3-A/VSI305Q.Seq.d/                       1130   0.0
VSI331 (VSI331Q) /CSM/VS/VSI3-B/VSI331Q.Seq.d/                       1120   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M16346|M16346.1 D.discoideum protein 29C gene, 5' end.           375  e-106  2
AC103127|AC103127.5 Rattus norvegicus clone CH230-216M20, WORKING DRAFT SEQUENCE, 1 ordered piece.    36  0.23  5
AC012188|AC012188.2 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete sequence.    40  0.23  5
AL049647|AL049647.7 Human DNA sequence from clone RP5-1027G4 on chromosome 20 Contains STSs and GSSs.    46  0.37  2
AX348651|AX348651.1 Sequence 109 from Patent WO0202807.           46  0.54  1
AX344260|AX344260.1 Sequence 107 from Patent WO0200926.           46  0.54  1
AX251872|AX251872.1 Sequence 133 from Patent WO0168911.           46  0.54  1
AP000460|AP000460.1 Homo sapiens genomic DNA, chromosome 21q21.2, clone:B87L12.    32  0.56  4
BZ219166|BZ219166.1 CH230-259F7.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-259F7, DNA sequence.    40  0.58  2
AX345934|AX345934.1 Sequence 1005 from Patent WO0200928.          38  0.59  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q23911) RecName: Full=Protein 29C; Flags: Precursor;                 293   3e-78
(O77257) RecName: Full=Protein gp17; Flags: Precursor;  &Y17042_...   107   4e-22
(Q54KD5) RecName: Full=P17/29C-like protein DDB_G0287399; Flags:...    94   3e-18
M16346_1(M16346|pid:none) D.discoideum protein 29C gene, 5' end.       76   1e-12
(O42643) RecName: Full=Pre-mRNA-splicing factor ATP-dependent RN...    33   7.3
AY809096_1(AY809096|pid:none) Schistosoma japonicum SJCHGC08862 ...    33   9.5

 psg: 0.99  gvh: 0.89  alm: 0.43  top: 0.27  tms: 0.00  mit: 0.27  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: extracellular, including cell wall
	 12.0 %: vacuolar
	 12.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for SSI272 is exc

>SSI272E.Seq
ATTTATTTCACTTTATTTGTACTTTTACTTTTGTATTACAAAATGAGATTCATTTTAGTT
TTAGTTTTAATTTTGGGCTTAGTCTCATCATCATTTGGTATCAATGTTGACAAGAATGAA
GTATCTCAAACCGAATTACAATCAGCTCGTGACTTTAGTTCATTCGCTATCGGCTTTGCA
GAGGGTATTGAAATTAGTTTGACTGGTAATCTTCATAAATGTGTTGCTGCAGCCGAATCA
AGTTTCAGTGAATTCTCAAATTCCTTCCATTTAATTGATAGTGGTTTGAAACATAAATCA
TTAGGTGATGCAAAGAGTGGTCTCCGTGATTTTGGTATTGGTTTAGTTGATTTGGTCAAA
ACCTACCAAAGATGTGGTGTTGGAAAATTCATTAGTGAAATCTCTGCCATTTCAAAAGAA
GTTACCAACGAAACTGGTATCATCAAACTCATTATTCATGAAGTCATCGATATTTTCCAC
AACTCCCACAGTTTAACTTCCGATTTCAAATCCGCCATTTCAGATTGTGGTCGTGGTGAT
TACACTGGTTGTGGTGTTGCAAGTGGAAAAATTGTCGGAATTTTAATGAGACAATAAATT
ATCAATTCATCCCCTATCCCTTTCCAAAAAGGGATCAGCTAAAAAAAAAAAAAAA