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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI268
Library SS
(Link to library)
Clone ID SSI268
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16448-1
Original site URL
Representative seq. ID SSI268Z
(Link to Original site)
Representative DNA sequence 
>SSI268 (SSI268Q) /CSM/SS/SSI2-C/SSI268Q.Seq.d/
XXXXXXXXXXAAACAATGAATTATTTAAGAAAAATTAATTCTTCACCTTCAAAATTCACT
CCAAATGGTAATCAAATTTGTCTTGGTCAAGTTTCAACAATTTCAACAATTGGTAGTTCA
ACTACAACTGCTTCACAATCAACAACAACAACAACAACTGGAACAGGTTCAACAACTAGT
AAACCAACAACCACTGGTGGATCAGGTTCATCAACAACTACAACTAAACCATCAACAACA
ACAACAACAACAACAACAACCACTGGTGGATCAAGTACAACTGGATCATCAAATGTTAAA
GCAGTTATTAAACAAACTATTAGACAAACTTGGTTTGATGGTACAAATACAAATACTTTG
GTTGATTGTACATTAACCAATCCATCAAGTAGTCCAATTCCTATTCCAAGATTTGCAATT
GATAAAACTCCATCATCATCTTGGGAATTGAATTTAGTTAGTTCAAATATTGTTTCATTT
ACAAGGTGGAATAACCAAATTAGNNCNNGTCAAACTTTATCATTTGGTTATATTGTTTCT
AGTAGTACTGTAATTACATTTACTCAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ACTCAATTATATTTAACAATAATAATAATAATATTAATAATAATAATAATATTAATAAAA
ATTATTTATTTTATTTTATATTCAA
sequence update 1997.12.31
Translated Amino Acid sequence 
---TMNYLRKINSSPSKFTPNGNQICLGQVSTISTIGSSTTTASQSTTTTTTGTGSTTSK
PTTTGGSGSSTTTTKPSTTTTTTTTTTGGSSTTGSSNVKAVIKQTIRQTWFDGTNTNTLV
DCTLTNPSSSPIPIPRFAIDKTPSSSWELNLVSSNIVSFTRWNNQIXXXQTLSFGYIVSS
STVITFTQI*kkkkkkkkktqlyltiiiiiliiiiilikiiyfilys
Translated Amino Acid sequence (All Frames) 
Frame A:
---nnelfkkn*fftfkihskw*snlswssfnnfnnw*fnyncftinnnnnnwnrfnn**
tnnhwwirfinnyn*tinnnnnnnnnhwwikynwiikc*ssy*tny*tnlv*wykykyfg
*lyinqsik*snsyskicn**nsiiilgiefs*fkycfiykve*pn*xxsnfiiwlycf*
*ycnyiysnlkkkkkkkkknsiifnnnnnninnnnninknylfyfif


Frame B:
---TMNYLRKINSSPSKFTPNGNQICLGQVSTISTIGSSTTTASQSTTTTTTGTGSTTSK
PTTTGGSGSSTTTTKPSTTTTTTTTTTGGSSTTGSSNVKAVIKQTIRQTWFDGTNTNTLV
DCTLTNPSSSPIPIPRFAIDKTPSSSWELNLVSSNIVSFTRWNNQIXXXQTLSFGYIVSS
STVITFTQI*kkkkkkkkktqlyltiiiiiliiiiilikiiyfilys


Frame C:
---q*ii*eklilhlqnslqmvikfvlvkfqqfqqlvvqlqllhnqqqqqqleqvqqlvn
qqplvdqvhqqlqlnhqqqqqqqqqplvdqvqldhqmlkqllnklldklglmvqiqilwl
ivh*pihqvvqflfqdlqliklhhhlgn*i*lvqilfhlqggitklxxvklyhlvilflv
vl*lhllkfkkkkkkkkkklnyi*q****y*****y**klfilfyiq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI268 (SSI268Q) /CSM/SS/SSI2-C/SSI268Q.Seq.d/                        593   e-168
SSM763 (SSM763Q) /CSM/SS/SSM7-C/SSM763Q.Seq.d/                        585   e-166
SSK593 (SSK593Q) /CSM/SS/SSK5-D/SSK593Q.Seq.d/                        585   e-166
SSI526 (SSI526Q) /CSM/SS/SSI5-B/SSI526Q.Seq.d/                        585   e-166
SSI228 (SSI228Q) /CSM/SS/SSI2-B/SSI228Q.Seq.d/                        585   e-166
SSI120 (SSI120Q) /CSM/SS/SSI1-A/SSI120Q.Seq.d/                        585   e-166
SSH762 (SSH762Q) /CSM/SS/SSH7-C/SSH762Q.Seq.d/                        585   e-166
SSG285 (SSG285Q) /CSM/SS/SSG2-D/SSG285Q.Seq.d/                        585   e-166
SSG235 (SSG235Q) /CSM/SS/SSG2-B/SSG235Q.Seq.d/                        585   e-166
SSG191 (SSG191Q) /CSM/SS/SSG1-D/SSG191Q.Seq.d/                        585   e-166
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF102955|AF102955.1 Pelvetia canaliculata country Isle of Man 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.    46  0.56  1
AF102953|AF102953.1 Pelvetia canaliculata country Norway 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.    46  0.56  1
AF102954|AF102954.1 Pelvetia canaliculata country Portugal 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.    46  0.56  1
BX571845|BX571845.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    36  1.2  5
U39645|U39645.1 Caenorhabditis elegans cosmid C14F11.    40  1.6  2
AC132086|AC132086.2 Mus musculus chromosome UNK clone RP24-556M16, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38  1.7  4
AF196362|AF196362.1 Uroleucon ambrosiae isolate IL2.17 cytochrome oxidase I subunit-like gene, partial sequence; tRNA-Leu gene, complete sequence; and cytochrome oxidase subunit II gene, partial cds; mitochondrial genes for mitochondrial products.    36  3.8  2
AF196366|AF196366.1 Uroleucon ambrosiae isolate LA.013 cytochrome oxidase subunit I gene, partial cds; tRNA-Leu gene, complete sequence; and cytochrome oxidase subunit II gene, partial cds; mitochondrial genes for mitochondrial products.    36  3.8  2
AF196356|AF196356.1 Uroleucon ambrosiae isolate AZ.065 cytochrome oxidase subunit I gene, partial cds; tRNA-Leu gene, complete sequence; and cytochrome oxidase subunit II gene, partial cds; mitochondrial genes for mitochondrial products.    36  3.8  2
AF196354|AF196354.1 Uroleucon ambrosiae isolate AZ.023 cytochrome oxidase subunit I gene, partial cds; tRNA-Leu gene, complete sequence; and cytochrome oxidase subunit II gene, partial cds; mitochondrial genes for mitochondrial products.    36  3.8  2
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116977_84(AC116977|pid:none) Dictyostelium discoideum chromoso...    41   0.038
(P22698) RecName: Full=Spore germination protein 270-11;  &B3562...    37   0.71
(P14768) RecName: Full=Endo-1,4-beta-xylanase A;          Short=...    35   1.6
CP000934_2552(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    34   4.6
protein update 2009. 2. 1
PSORT 

 psg: 0.70  gvh: 0.50  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.89  mip: 0.17
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  8.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for SSI268 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI268Z
3' end seq. 
>SSI268Z.Seq
----------AAACAATGAATTATTTAAGAAAAATTAATTCTTCACCTTCAAAATTCACT
CCAAATGGTAATCAAATTTGTCTTGGTCAAGTTTCAACAATTTCAACAATTGGTAGTTCA
ACTACAACTGCTTCACAATCAACAACAACAACAACAACTGGAACAGGTTCAACAACTAGT
AAACCAACAACCACTGGTGGATCAGGTTCATCAACAACTACAACTAAACCATCAACAACA
ACAACAACAACAACAACAACCACTGGTGGATCAAGTACAACTGGATCATCAAATGTTAAA
GCAGTTATTAAACAAACTATTAGACAAACTTGGTTTGATGGTACAAATACAAATACTTTG
GTTGATTGTACATTAACCAATCCATCAAGTAGTCCAATTCCTATTCCAAGATTTGCAATT
GATAAAACTCCATCATCATCTTGGGAATTGAATTTAGTTAGTTCAAATATTGTTTCATTT
ACAAGGTGGAATAACCAAATTAGNNCNNGTCAAACTTTATCATTTGGTTATATTGTTTCT
AGTAGTACTGTAATTACATTTACTCAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ACTCAATTATATTTAACAATAATAATAATAATATTAATAATAATAATAATATTAATAAAA
ATTATTTATTTTATTTTATATTCAA
Length of 3' end seq. 675
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -