SSI266
Library SS
(Link to library)
Clone ID SSI266
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16177-1
Original site URL
Representative seq. ID SSI266E
(Link to Original site)
Representative DNA sequence
>SSI266 (SSI266Q) /CSM/SS/SSI2-C/SSI266Q.Seq.d/
CATCCAAGTTCATCAAACCAGGTAGATTAGTAATCCTCTTAAACGGTAAATACGCCGGTC
GTAAGGCTGTTGTCATCAAGACCTTCGATGATGCCACCGCAAGCAAAACAAGACCATACG
GCCACTGTTTAGTTGCTGGTATCGACAAATACCCACGTTCAATCGTTAGATCAATGAGCA
GAAAGACCATCCTCAAACGTACTGCCATCCGTTCATTTGTTAAAGTCGTCAATTACAACC
ACATCATGCCAACCCGTTACAACTTTGAAGGTCGTGATGAATCTGCCTTCACTGGTCTCA
AAAACACCGTCACTGTTGAAAGCTCACAAGTCGCCAAACGTGCTCACACTCGTTTAGCCG
TCAAAAAGATCTTTGAAGCCAAACACAAAGCTGGTAAATCAAAATGGTTCTTCTCTAAAT
TAAGATTCTAAATTATCTTTTTATAATAAATTTGTTTCTTTAAAAAATATAAAAA
sequence update 1998. 5. 1
Translated Amino Acid sequence
SKFIKPGRLVILLNGKYAGRKAVVIKTFDDATASKTRPYGHCLVAGIDKYPRSIVRSMSR
KTILKRTAIRSFVKVVNYNHIMPTRYNFEGRDESAFTGLKNTVTVESSQVAKRAHTRLAV
KKIFEAKHKAGKSKWFFSKLRF*iifl**icffkkyk


Translated Amino Acid sequence (All Frames)
Frame A:
hpsssnqvd**ss*tvntpvvrllssrpsmmppqakqdhtatv*llvstnthvqsldq*a
erpssnvlpsvhllkssitttscqpvttlkvvmnlpslvsktpsllkahkspnvltlv*p
skrslkpntklvnqngssln*dsklsfynkfvslknik


Frame B:
iqvhqtr*isnplkr*irrs*gcchqdlr*chrkqnktirplfscwyrqiptfnr*ineq
kdhpqtychpfic*srqlqphhanplql*rs**iclhwsqkhrhc*kltsrqtcshsfsr
qkdl*sqtqsw*ikmvll*ikilnylfiinlfl*ki*k


Frame C:
SKFIKPGRLVILLNGKYAGRKAVVIKTFDDATASKTRPYGHCLVAGIDKYPRSIVRSMSR
KTILKRTAIRSFVKVVNYNHIMPTRYNFEGRDESAFTGLKNTVTVESSQVAKRAHTRLAV
KKIFEAKHKAGKSKWFFSKLRF*iifl**icffkkyk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSI266 (SSI266Q) /CSM/SS/SSI2-C/SSI266Q.Seq.d/ 942 0.0
VFL369 (VFL369Q) /CSM/VF/VFL3-C/VFL369Q.Seq.d/ 934 0.0
VHM550 (VHM550Q) /CSM/VH/VHM5-C/VHM550Q.Seq.d/ 926 0.0
SSJ556 (SSJ556Q) /CSM/SS/SSJ5-C/SSJ556Q.Seq.d/ 904 0.0
FC-AB06 (FC-AB06Q) /CSM/FC/FC-AB/FC-AB06Q.Seq.d/ 898 0.0
FC-027 (FC-027Q) /CSM/CG/CG-FC/FC-027Q.Seq.d/ 898 0.0
FC-BM23 (FC-BM23Q) /CSM/FC/FC-BM/FC-BM23Q.Seq.d/ 896 0.0
VSB706 (VSB706Q) /CSM/VS/VSB7-A/VSB706Q.Seq.d/ 773 0.0
SLK886 (SLK886Q) /CSM/SL/SLK8-D/SLK886Q.Seq.d/ 650 0.0
VHM802 (VHM802Q) /CSM/VH/VHM8-A/VHM802Q.Seq.d/ 517 e-146

own update 2002.12.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BQ588323|BQ588323.1 E012308-024-008-F12-SP6 MPIZ-ADIS-024-leaf Beta vulgaris cDNA clone 024-008-F12 5-PRIME, mRNA sequence. 54 1e-06 2
BQ592162|BQ592162.1 E012696-024-021-K06-SP6 MPIZ-ADIS-024-developing root Beta vulgaris cDNA clone 024-021-K06 5-PRIME, mRNA sequence. 50 1e-06 2
CA517466|CA517466.1 KS09080H10 KS09 Capsicum annuum cDNA, mRNA sequence. 38 4e-04 3
CB080831|CB080831.1 qp48g09.b1 Hedyotis terminalis flower - Stage 2 (NYBG) Hedyotis terminalis cDNA clone qp48g09, mRNA sequence. 56 4e-04 1
CA517250|CA517250.1 KS09076E06 KS09 Capsicum annuum cDNA, mRNA sequence. 38 5e-04 3
BM065378|BM065378.1 KS07002H10 KS07 Capsicum annuum cDNA, mRNA sequence. 38 5e-04 3
CA516038|CA516038.1 KS09050G04 KS09 Capsicum annuum cDNA, mRNA sequence. 38 8e-04 3
CA522065|CA522065.1 KS11039G08 KS11 Capsicum annuum cDNA, mRNA sequence. 38 9e-04 3
BQ040868|BQ040868.1 gd39e07.y1 Moss EST library PPS Physcomitrella patens cDNA clone PEP_SOURCE_ID:PPS101014 5' similar to SW:RL27_PEA Q05462 60S RIBOSOMAL PROTEIN L27. ;, mRNA sequence. 34 0.002 3
BQ039091|BQ039091.1 gd04g08.y1 Moss EST library PPS Physcomitrella patens cDNA clone PEP_SOURCE_ID:PPS21315 5' similar to SW:RL27_PEA Q05462 60S RIBOSOMAL PROTEIN L27. ;, mRNA sequence. 34 0.003 3
dna update 2003. 7.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55BE6) RecName: Full=60S ribosomal protein L27; 281 4e-75
AY682471_1(AY682471|pid:none) Chara globularis 60S ribosomal pro... 148 5e-35
EF083448_1(EF083448|pid:none) Picea sitchensis clone WS02716_F22... 144 8e-34
EU979496_1(EU979496|pid:none) Ornithoctonus huwena clone HWEc247... 142 3e-33
(P0C2H7) RecName: Full=60S ribosomal protein L27-B; &S69638(S69... 140 1e-32
(P0C2H6) RecName: Full=60S ribosomal protein L27-A; &S46790(S46... 140 1e-32
AM479241_1(AM479241|pid:none) Vitis vinifera contig VV78X167717.... 140 2e-32
(P41101) RecName: Full=60S ribosomal protein L27; &Z30162_1(Z30... 139 3e-32
AY857441_1(AY857441|pid:none) Suberites domuncula L27 mRNA, comp... 139 4e-32
AB374965_1(AB374965|pid:none) Solea senegalensis RPL27 mRNA for ... 138 5e-32
protein update 2009. 7. 8
PSORT

psg: 0.77 gvh: 0.37 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.05
nuc: 0.12 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for SSI266 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSI266E
Full length Seq.
>SSI266E.Seq
CATCCAAGTTCATCAAACCAGGTAGATTAGTAATCCTCTTAAACGGTAAATACGCCGGTC
GTAAGGCTGTTGTCATCAAGACCTTCGATGATGCCACCGCAAGCAAAACAAGACCATACG
GCCACTGTTTAGTTGCTGGTATCGACAAATACCCACGTTCAATCGTTAGATCAATGAGCA
GAAAGACCATCCTCAAACGTACTGCCATCCGTTCATTTGTTAAAGTCGTCAATTACAACC
ACATCATGCCAACCCGTTACAACTTTGAAGGTCGTGATGAATCTGCCTTCACTGGTCTCA
AAAACACCGTCACTGTTGAAAGCTCACAAGTCGCCAAACGTGCTCACACTCGTTTAGCCG
TCAAAAAGATCTTTGAAGCCAAACACAAAGCTGGTAAATCAAAATGGTTCTTCTCTAAAT
TAAGATTCTAAATTATCTTTTTATAATAAATTTGTTTCTTTAAAAAATATAAAAA
Length of full length seq. 475