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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI264
Library SS
(Link to library)
Clone ID SSI264
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16289-1
Original site URL
Representative seq. ID SSI264Z
(Link to Original site)
Representative DNA sequence 
>SSI264 (SSI264Q) /CSM/SS/SSI2-C/SSI264Q.Seq.d/
XXXXXXXXXXCATGGGTGATTTTGTCGATAGAGGATATTACAGTTTAGAAACATTTACAT
ATTTACTTGCACTCAAAGCTAGATACCCAGATAAAATTACATTATTAAGAGGAAATCATG
AAAGTAGACAAATCACACAAGTTTATGGTTTTTATGATGAATGCCAACAAAAATATGGTA
ATGTAAATGCTTGGAAATATTGTACAAGTGTTTTCGATTTCTTAACTTTAGCTGCTATTA
TTGATGGTAAAGTACTTTGTGTTCATGGTGGTTTATCACCAAAAGTACGTACTTTGGATC
AAATTAGAATTATTTCAAGAAATTTAGAGATTCCACATGAAGGTCCATTCTGTGATTTAA
TGTGGTCAGATCCAGAAGATATTGAACAATGGCAACCATCACCAAGAGGTGCAGGTTGGT
TATTCGGAAGTAAAGTCACTGCAGAGTTTGAACATATCAATGGTCTTAACCTCATTTGTC
GTGCTCATCAATTGGTACAAGAAGGTTATAGATATATGTTTGATAATAGTTTAGTCACTG
TTTGGTCTGCTCCAAACTATTGTTATAGATGTGGTAATGTCGCTTCCATCCTTTCACTCA
ATGAAAACTTGGATAGAGATTTCAAAATTTTCCAAGCCGTTCAAGAAGAAAGAAATATAC
CAACTCGTACAACTATGCAATATTTCTTTTAAATTATTAATTTTATTCATCATTTAAAAA
AAAA
sequence update 1997.12.31
Translated Amino Acid sequence 
---MGDFVDRGYYSLETFTYLLALKARYPDKITLLRGNHESRQITQVYGFYDECQQKYGN
VNAWKYCTSVFDFLTLAAIIDGKVLCVHGGLSPKVRTLDQIRIISRNLEIPHEGPFCDLM
WSDPEDIEQWQPSPRGAGWLFGSKVTAEFEHINGLNLICRAHQLVQEGYRYMFDNSLVTV
WSAPNYCYRCGNVASILSLNENLDRDFKIFQAVQEERNIPTRTTMQYFF*iinfihhlkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---MGDFVDRGYYSLETFTYLLALKARYPDKITLLRGNHESRQITQVYGFYDECQQKYGN
VNAWKYCTSVFDFLTLAAIIDGKVLCVHGGLSPKVRTLDQIRIISRNLEIPHEGPFCDLM
WSDPEDIEQWQPSPRGAGWLFGSKVTAEFEHINGLNLICRAHQLVQEGYRYMFDNSLVTV
WSAPNYCYRCGNVASILSLNENLDRDFKIFQAVQEERNIPTRTTMQYFF*iinfihhlkk


Frame B:
---wvilsieditv*khlhiylhskldtqiklhy*eeimkvdkshkfmvfmmnanknmvm
*mlgnivqvfsis*l*llllmvkyfvfmvvyhqkyvlwiklelfqei*rfhmkvhsvi*c
gqiqkilnngnhhqevqvgysevkslqslnismvltsfvvlinwykkvidicliiv*slf
gllqtividvvmslpsfhsmktwieiskfskpfkkkeiyqlvqlcnisfkllilfii*kk


Frame C:
---g*fcr*rilqfrniyiftctqs*ipr*nyiikrks*k*tnhtslwfl**mptkiw*c
kcleilykcfrflnfscyy*w*stlcswwfitkstyfgsn*nyfkkfrdst*rsil*fnv
vrsrry*tmatitkrcrlvirk*shcrv*tyqws*phlscssigtrrl*iyv***fshcl
vcsklll*mw*crfhpftq*klg*rfqnfpsrsrrkkytnsynyaifllny*fyssfkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK166 (SSK166Q) /CSM/SS/SSK1-C/SSK166Q.Seq.d/                       1398   0.0
SSI264 (SSI264Q) /CSM/SS/SSI2-C/SSI264Q.Seq.d/                       1398   0.0
SSA803 (SSA803Q) /CSM/SS/SSA8-A/SSA803Q.Seq.d/                       1398   0.0
SSJ104 (SSJ104Q) /CSM/SS/SSJ1-A/SSJ104Q.Seq.d/                       1368   0.0
VSJ277 (VSJ277Q) /CSM/VS/VSJ2-D/VSJ277Q.Seq.d/                       1362   0.0
SSB227 (SSB227Q) /CSM/SS/SSB2-B/SSB227Q.Seq.d/                       1047   0.0
CFA508 (CFA508Q) /CSM/CF/CFA5-A/CFA508Q.Seq.d/                       1033   0.0
SSD819 (SSD819Q) /CSM/SS/SSD8-A/SSD819Q.Seq.d/                       1023   0.0
SSI621 (SSI621Q) /CSM/SS/SSI6-A/SSI621Q.Seq.d/                        948   0.0
AFK857 (AFK857Q) /CSM/AF/AFK8-C/AFK857Q.Seq.d/                        946   0.0
own update 2001. 6.15
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF176121|AF176121.1 Dictyostelium discoideum protein phosphatase 6 catalytic subunit (pppD) mRNA, complete cds.  1398  0.0  1
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   942  0.0  2
AF161253|AF161253.1 Dictyostelium discoideum protein phosphatase 4 catalytic subunit (pppC) mRNA, complete cds.    92  4e-61  8
AC115607|AC115607.2 Dictyostelium discoideum chromosome 2 map 4559693-4624405 strain AX4, complete sequence.    92  9e-51  9
AZ547487|AZ547487.1 ENTEE91TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    80  8e-49  4
AZ683356|AZ683356.1 ENTIR84TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    72  1e-37  4
AL439996|AL439996.1 T3 end of clone BD0AA009C10 of library BD0AA from strain CBS 94 of  Candida tropicalis.    72  3e-34  6
AF138278|AF138278.1 Dictyostelium discoideum protein phosphatase 2A catalytic subunit mRNA, complete cds.    78  2e-31  4
AL439349|AL439349.1 T7 end of clone BD0AA004A03 of library BD0AA from strain CBS 94 of  Candida tropicalis.    88  3e-31  5
BF665642|BF665642.1 602119856F1 NIH_MGC_56 Homo sapiens cDNA clone IMAGE:4277221 5', mRNA sequence.    70  1e-26  5
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF176121_1(AF176121|pid:none) Dictyostelium discoideum protein p...   478   e-133
(Q9U9A3) RecName: Full=Serine/threonine-protein phosphatase 6 ca...   475   e-133
(Q8LSN3) RecName: Full=Phytochrome-associated serine/threonine p...   371   e-101
T17012(T17012) phosphoprotein phosphatase (EC 3.1.3.16) - apple ...   370   e-101
EF146829_1(EF146829|pid:none) Populus trichocarpa clone WS01214_...   369   e-101
(Q9LHE7) RecName: Full=Phytochrome-associated serine/threonine p...   369   e-101
(Q9SX52) RecName: Full=Phytochrome-associated serine/threonine p...   367   e-100
(O00743) RecName: Full=Serine/threonine-protein phosphatase 6 ca...   367   e-100
AY890852_1(AY890852|pid:none) Synthetic construct Homo sapiens c...   367   e-100
AK295190_1(AK295190|pid:none) Homo sapiens cDNA FLJ51845 complet...   367   e-100
protein update 2009. 6.13
PSORT 

 psg: 0.75  gvh: 0.43  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SSI264 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI264Z
3' end seq. 
>SSI264Z.Seq
----------CATGGGTGATTTTGTCGATAGAGGATATTACAGTTTAGAAACATTTACAT
ATTTACTTGCACTCAAAGCTAGATACCCAGATAAAATTACATTATTAAGAGGAAATCATG
AAAGTAGACAAATCACACAAGTTTATGGTTTTTATGATGAATGCCAACAAAAATATGGTA
ATGTAAATGCTTGGAAATATTGTACAAGTGTTTTCGATTTCTTAACTTTAGCTGCTATTA
TTGATGGTAAAGTACTTTGTGTTCATGGTGGTTTATCACCAAAAGTACGTACTTTGGATC
AAATTAGAATTATTTCAAGAAATTTAGAGATTCCACATGAAGGTCCATTCTGTGATTTAA
TGTGGTCAGATCCAGAAGATATTGAACAATGGCAACCATCACCAAGAGGTGCAGGTTGGT
TATTCGGAAGTAAAGTCACTGCAGAGTTTGAACATATCAATGGTCTTAACCTCATTTGTC
GTGCTCATCAATTGGTACAAGAAGGTTATAGATATATGTTTGATAATAGTTTAGTCACTG
TTTGGTCTGCTCCAAACTATTGTTATAGATGTGGTAATGTCGCTTCCATCCTTTCACTCA
ATGAAAACTTGGATAGAGATTTCAAAATTTTCCAAGCCGTTCAAGAAGAAAGAAATATAC
CAACTCGTACAACTATGCAATATTTCTTTTAAATTATTAATTTTATTCATCATTTAAAAA
AAAA
Length of 3' end seq. 714
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -