>SSI259 (SSI259Q) /CSM/SS/SSI2-C/SSI259Q.Seq.d/
GCTAAAGAACGTGGTGATTTATTACTCCCAAGCATCGAATCCGAAAAACGTAAACATAAA
TTAAAGAGATTGGTCCAAGCACCAAACTCCTTCTTTATGGATATCAACTGTCACGGTTGT
AGAACCATCACTACCGTTTTCTCACACGCCCAAAACGTTGTCATTTGCAGTTCATGTTCA
ACTGTTATTGCTCAACCAACTGGTGGTCGTGCTAGAATCACTGCCGGTTGTCGTTTAAGA
CAAAAATCCGACTAAGGTTACCGTCCAATCGCACCAACGCTTTCAATTTTTTTTTTAATA
GAAAATAAACAATAAAAAAAAATGCTATGTGCAGAGTAATAATATAATATGTATATAGAA
TTTTATATATAAAAAAAAAA

AKERGDLLLPSIESEKRKHKLKRLVQAPNSFFMDINCHGCRTITTVFSHAQNVVICSSCS
TVIAQPTGGRARITAGCRLRQKSD*gyrpiaptlsifflienkq*kkmlcae**ynmyie
fyi*kk

Frame A:
AKERGDLLLPSIESEKRKHKLKRLVQAPNSFFMDINCHGCRTITTVFSHAQNVVICSSCS
TVIAQPTGGRARITAGCRLRQKSD*gyrpiaptlsifflienkq*kkmlcae**ynmyie
fyi*kk


Frame B:
lknvviyysqasnpknvnin*rdwskhqtpslwistvtvvepslpfshtpktlsfavhvq
llllnqlvvvleslpvvv*dknptkvtvqshqrfqfff**kinnkkkcyvqsnniici*n
fiykkk


Frame C:
*rtw*fitpkhrirkt*t*ikeigpstklllygyqlsrl*nhhyrfltrpkrchlqfmfn
cycstnwwsc*nhcrlsfktkirlrlpsnrtnafnfffnrk*tikknamcrvii*yvyri
lyikkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI259 (SSI259Q) /CSM/SS/SSI2-C/SSI259Q.Seq.d/                        620   e-177
VSJ164 (VSJ164Q) /CSM/VS/VSJ1-C/VSJ164Q.Seq.d/                        613   e-175
VSI793 (VSI793Q) /CSM/VS/VSI7-D/VSI793Q.Seq.d/                        613   e-175
VSH184 (VSH184Q) /CSM/VS/VSH1-D/VSH184Q.Seq.d/                        613   e-175
VSB280 (VSB280Q) /CSM/VS/VSB2-D/VSB280Q.Seq.d/                        613   e-175
VSG840 (VSG840Q) /CSM/VS/VSG8-B/VSG840Q.Seq.d/                        607   e-173
VFI705 (VFI705Q) /CSM/VF/VFI7-A/VFI705Q.Seq.d/                        605   e-172
VFG624 (VFG624Q) /CSM/VF/VFG6-A/VFG624Q.Seq.d/                        605   e-172
VSI480 (VSI480Q) /CSM/VS/VSI4-D/VSI480Q.Seq.d/                        603   e-172
VSG503 (VSG503Q) /CSM/VS/VSG5-A/VSG503Q.Seq.d/                        603   e-172

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.   285  e-169  4
AX536650|AX536650.1 Sequence 251 from Patent WO02064766.          50  0.005  2
Z28156|Z28156.1 S.cerevisiae chromosome XI reading frame ORF YKL156w.    50  0.006  2
AZ923598|AZ923598.1 4908.gf21i19.s1 Saccharomyces cariocanus UFRJ 50791 Saccharomyces cariocanus genomic clone 4908.gf21i19.s1, DNA sequence.    48  0.006  2
Z28155|Z28155.1 S.cerevisiae chromosome XI reading frame ORF YKL155c.    50  0.011  2
BU641274|BU641274.2 mgmk005xK07f.b pmk1 in pBluescriptII sk(-) plasmid Magnaporthe grisea cDNA clone mgmk005xK07 5', mRNA sequence.    50  0.020  1
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          42  0.031  2
BF824319|BF824319.1 NcEST3a21h12.y1 Nc 1314 Tachyzoite cDNA Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36  0.096  2
BG235080|BG235080.1 NcEST3a40b01.y1 Nc 1314 Tachyzoite cDNA Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36  0.10  2
BF249095|BF249095.1 NcEST3a07a05.y1 Nc 1314 Tachyzoite cDNA Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36  0.10  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF082617_1(EF082617|pid:none) Picea sitchensis clone WS0299_E22 ...   124   1e-27
BT051468_1(BT051468|pid:none) Medicago truncatula clone MTYF1_F2...   122   3e-27
AY857484_1(AY857484|pid:none) Suberites domuncula S27 mRNA, comp...   122   4e-27
DQ241850_1(DQ241850|pid:none) Solanum tuberosum clone 187G01 rib...   121   7e-27
BT053528_1(BT053528|pid:none) Medicago truncatula clone MTYFP_FQ...   121   7e-27
EF146224_1(EF146224|pid:none) Populus trichocarpa clone WS0116_F...   121   9e-27
BC152055_1(BC152055|pid:none) Xenopus tropicalis hypothetical pr...   120   2e-26
(Q9M2F1) RecName: Full=40S ribosomal protein S27-2;  &AF083336_1...   120   2e-26
DQ673404_1(DQ673404|pid:none) Diaphorina citri putative ribosoma...   120   2e-26
EF179453_1(EF179453|pid:none) Xenopsylla cheopis clone XC-86 rib...   120   2e-26

 psg: 0.80  gvh: 0.47  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.05  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SSI259 is cyt

>SSI259E.Seq
GCTAAAGAACGTGGTGATTTATTACTCCCAAGCATCGAATCCGAAAAACGTAAACATAAA
TTAAAGAGATTGGTCCAAGCACCAAACTCCTTCTTTATGGATATCAACTGTCACGGTTGT
AGAACCATCACTACCGTTTTCTCACACGCCCAAAACGTTGTCATTTGCAGTTCATGTTCA
ACTGTTATTGCTCAACCAACTGGTGGTCGTGCTAGAATCACTGCCGGTTGTCGTTTAAGA
CAAAAATCCGACTAAGGTTACCGTCCAATCGCACCAACGCTTTCAATTTTTTTTTTAATA
GAAAATAAACAATAAAAAAAAATGCTATGTGCAGAGTAATAATATAATATGTATATAGAA
TTTTATATATAAAAAAAAAA