SSI254
Library SS
(Link to library)
Clone ID SSI254
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16244-1
Original site URL
Representative seq. ID SSI254E
(Link to Original site)
Representative DNA sequence
>SSI254 (SSI254Q) /CSM/SS/SSI2-C/SSI254Q.Seq.d/
ATCACTTCTGATGGAGCACCAGAATTTTTAATCTTTTACAGTACTTTTAGTGATGAAATT
GCAAGTGAAAAAATTCAAACAAAACAAATATTACCACTCCATTGGAAGGCTCAATGTGTA
TCTCTAGTGTCTATTCTTTTTCAATCAAAATGAACAATTACCTCTTGGGTGGTGATTACA
TTATCTCAATTCTAGGTAACTCTGATGTTTCAAAATGCTACAAGCATGTCCCAGTAAACC
AAGCTAACCAAGAACCTGAAAGTATTGTATTACTTTCAACATCTTCTGAACAACTTGTTT
TACAATCTGATGGTGAAACAGTCGTTCAAAAAAATATAGAGAATCAAAAATCTACTGCTT
CAACACCACTAGTCAATGGAGTTTTAATTTTTTCAACAGTTCTTTTATTTTTACAATTAA
TAATCTAAAACGTTTTAACAAAAACTCTCTTTTTTTTTAAAAAAAAAAATAAATAAAAAA
AATGTTTTCAAATATAAACAAAAAAAA
sequence update 1997.12.31
Translated Amino Acid sequence
hf*wstrifnllqyf***nck*KNSNKTNITTPLEGSMCISSVYSFSIKMNNYLLGGDYI
ISILGNSDVSKCYKHVPVNQANQEPESIVLLSTSSEQLVLQSDGETVVQKNIENQKSTAS
TPLVNGVLIFSTVLLFLQLII*nvltktlfffkkknk*kkcfqi*tkk


Translated Amino Acid sequence (All Frames)
Frame A:
itsdgapeflifystfsdeiasekiqtkqilplhwkaqcvslvsilfqsk*titswvvit
lsqf*vtlmfqnatsmsq*tkltknlkvlyyfqhllnnlfynlmvkqsfkki*riknlll
qhh*smef*ffqqffyfyn**sktf*qklsfflkkkinkknvfkykqkk


Frame B:
sllmehqnf*sftvllvmklqvkkfkqnkyyhsigrlnvyl*clfffnqneqlplgw*lh
ylnsr*l*cfkmlqacpskps*prt*kycitfnif*ttcfti*w*nsrskkyreskiycf
nttsqwsfnffnssfiftinnlkrfnknslff*kkk*ikkmfsninkk


Frame C:
hf*wstrifnllqyf***nck*KNSNKTNITTPLEGSMCISSVYSFSIKMNNYLLGGDYI
ISILGNSDVSKCYKHVPVNQANQEPESIVLLSTSSEQLVLQSDGETVVQKNIENQKSTAS
TPLVNGVLIFSTVLLFLQLII*nvltktlfffkkknk*kkcfqi*tkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSI254 (SSI254Q) /CSM/SS/SSI2-C/SSI254Q.Seq.d/ 848 0.0
SSK675 (SSK675Q) /CSM/SS/SSK6-D/SSK675Q.Seq.d/ 835 0.0
SSK461 (SSK461Q) /CSM/SS/SSK4-C/SSK461Q.Seq.d/ 835 0.0
SSK128 (SSK128Q) /CSM/SS/SSK1-B/SSK128Q.Seq.d/ 835 0.0
SSJ735 (SSJ735Q) /CSM/SS/SSJ7-B/SSJ735Q.Seq.d/ 835 0.0
SSI433 (SSI433Q) /CSM/SS/SSI4-B/SSI433Q.Seq.d/ 835 0.0
SSH287 (SSH287Q) /CSM/SS/SSH2-D/SSH287Q.Seq.d/ 835 0.0
SSG390 (SSG390Q) /CSM/SS/SSG3-D/SSG390Q.Seq.d/ 835 0.0
SSF601 (SSF601Q) /CSM/SS/SSF6-A/SSF601Q.Seq.d/ 835 0.0
SSF529 (SSF529Q) /CSM/SS/SSF5-B/SSF529Q.Seq.d/ 835 0.0

own update 2002. 7. 8
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL121572|AL121572.14 Human DNA sequence from clone RP11-512H23 on chromosome Xq25-26.2. 44 0.88 2
G79934|G79934.1 S209P6271FG9.T0 C3H/HeJ Mus musculus STS genomic, sequence tagged site. 42 0.96 2
BU438831|BU438831.1 604142434F1 CSEQRBN11 Gallus gallus cDNA clone ChEST977c10 5', mRNA sequence. 36 1.1 2
CD019911|CD019911.1 NXLV130_B02_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA clone NXLV130_B02 5', mRNA sequence. 36 1.2 2
CD018464|CD018464.1 NXLV_028_H10_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA clone NXLV_028_H10 5', mRNA sequence. 36 1.2 2
BG812182|BG812182.1 daf67a08.x1 NICHD XGC Eye1 Xenopus laevis cDNA clone IMAGE:4743447 3', mRNA sequence. 38 1.6 2
AC135293|AC135293.1 Mus musculus chromosome UNK clone RP23-206K5, WORKING DRAFT SEQUENCE, 8 unordered pieces. 44 1.6 1
AL162496|AL162496.11 Human DNA sequence *** SEQUENCING CANCELLED *** from clone RP11-237E3. 44 1.6 1
AQ263489|AQ263489.1 CITBI-E1-2505A24.TR CITBI-E1 Homo sapiens genomic clone 2505A24, genomic survey sequence. 44 1.6 1
AC007100|AC007100.3 Homo sapiens clone RP11-462D13, complete sequence. 38 1.8 5
dna update 2003. 7.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

FN357555_8(FN357555|pid:none) Schistosoma mansoni genome sequenc... 35 1.0
AE008384_3094(AE008384|pid:none) Methanosarcina mazei strain Goe... 34 1.8
AY093107_1(AY093107|pid:none) Arabidopsis thaliana unknown prote... 34 2.3
CP000685_2192(CP000685|pid:none) Flavobacterium johnsoniae UW101... 32 8.7
CP000968_380(CP000968|pid:none) Candidatus Korarchaeum cryptofil... 32 8.7
CP001037_2648(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 32 8.7

protein update 2009. 7. 8
PSORT

psg: 0.72 gvh: 0.48 alm: 0.26 top: 0.60 tms: 0.07 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.10 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
16.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: endoplasmic reticulum
8.0 %: plasma membrane
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for SSI254 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSI254E
Full length Seq.
>SSI254E.Seq
ATCACTTCTGATGGAGCACCAGAATTTTTAATCTTTTACAGTACTTTTAGTGATGAAATT
GCAAGTGAAAAAATTCAAACAAAACAAATATTACCACTCCATTGGAAGGCTCAATGTGTA
TCTCTAGTGTCTATTCTTTTTCAATCAAAATGAACAATTACCTCTTGGGTGGTGATTACA
TTATCTCAATTCTAGGTAACTCTGATGTTTCAAAATGCTACAAGCATGTCCCAGTAAACC
AAGCTAACCAAGAACCTGAAAGTATTGTATTACTTTCAACATCTTCTGAACAACTTGTTT
TACAATCTGATGGTGAAACAGTCGTTCAAAAAAATATAGAGAATCAAAAATCTACTGCTT
CAACACCACTAGTCAATGGAGTTTTAATTTTTTCAACAGTTCTTTTATTTTTACAATTAA
TAATCTAAAACGTTTTAACAAAAACTCTCTTTTTTTTTAAAAAAAAAAATAAATAAAAAA
AATGTTTTCAAATATAAACAAAAAAAA
Length of full length seq. 507