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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI253
Library SS
(Link to library)
Clone ID SSI253
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12259-1
Original site URL
Representative seq. ID SSI253Z
(Link to Original site)
Representative DNA sequence 
>SSI253 (SSI253Q) /CSM/SS/SSI2-C/SSI253Q.Seq.d/
XXXXXXXXXXATAATACATACTTTCCACACCAAATGTATCGAACCAGTTTCATTCTTTGA
AGGAGGTGTAATTAGTGCAGATTTCAAATCTCAACAAATGTATGTCCATTTTGGATTAGT
TGCTGGTAATTCGACTGTTTGGGGTAAATATTGGGGATTTGGTTCAAATAGTACTGAATA
TGTTTTAATAAATGGTACATGCACTTCAAACAAATTATCATATCCATTCCCACCTTCTGT
TCCAAAATTCAAGAAAGTTGGTGAAACTAAAATTGGTCAAATAGATGTTGATGTAGTTAT
TATGAAACACCAAGAAAAGTATAATAACTATACCAGACAATGCACATTAATTCAAAAAGG
TACTTGCACACCAATGTCAAATAATGTTGGTAATATTGATAAATCAAACAAGGGTTTCAC
TTTAATGAATTTCTACAAATATGAAGGAAAAGCTCGTAAAGATAAATTCCAATTACCATC
AGAATGTTATGGTGTTCAACCAAGTGACTCAACTTCATCCTTTAGAATCAATACAAATAA
TGTTGCTCAAAATGTTCTTGGTCATAATGAAGATGAACCAAATAAAAAACAACAAAAAAC
ATTACCAAAATCAATTCCTTTCCATAATTCATTTCAGTAGAAAATGAATAAATTAAAATT
TTAATAAAAACCTATTTTTACATTGTGATTCACCAATTCTAAAAAAAAAAAAAAA
sequence update 1997.12.31
Translated Amino Acid sequence 
---IHTFHTKCIEPVSFFEGGVISADFKSQQMYVHFGLVAGNSTVWGKYWGFGSNSTEYV
LINGTCTSNKLSYPFPPSVPKFKKVGETKIGQIDVDVVIMKHQEKYNNYTRQCTLIQKGT
CTPMSNNVGNIDKSNKGFTLMNFYKYEGKARKDKFQLPSECYGVQPSDSTSSFRINTNNV
AQNVLGHNEDEPNKKQQKTLPKSIPFHNSFQ*kmnklkf**kpiftl*ftnskkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---*yilstpnvsnqfhslkev*lvqisnlnkcmsild*llvirlfgvnigdlvqivlnm
f**mvhalqtnyhihshllfqnsrklvklklvk*mlm*ll*ntkksiitipdnah*fkkv
lahqcqimlvilinqtrvsl**istnmkeklvkinsnyhqnvmvfnqvtqlhplesiqim
llkmflvimkmnqiknnkkhyqnqflsiihfsrk*in*nfnknlflhcdspilkkkk


Frame B:
---ntyfphqmyrtsfil*rrcn*crfqistnvcpfwiscw*fdclg*ilgiwfk*y*ic
fnkwymhfkqiiisiptfcskiqesw*n*nwsnrc*csyyetprkv**lyqtmhinskry
lhtnvk*cw*y**ikqgfhfneflqi*rkss*r*ipitirmlwcstk*lnfil*nqyk*c
cskcsws**r*tk*kttknitkinsfp*fisvene*ikiliktyfyivihqf*kkkk


Frame C:
---IHTFHTKCIEPVSFFEGGVISADFKSQQMYVHFGLVAGNSTVWGKYWGFGSNSTEYV
LINGTCTSNKLSYPFPPSVPKFKKVGETKIGQIDVDVVIMKHQEKYNNYTRQCTLIQKGT
CTPMSNNVGNIDKSNKGFTLMNFYKYEGKARKDKFQLPSECYGVQPSDSTSSFRINTNNV
AQNVLGHNEDEPNKKQQKTLPKSIPFHNSFQ*kmnklkf**kpiftl*ftnskkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI253 (SSI253Q) /CSM/SS/SSI2-C/SSI253Q.Seq.d/                       1126   0.0
SHE803 (SHE803Q) /CSM/SH/SHE8-A/SHE803Q.Seq.d/                       1098   0.0
SSE702 (SSE702Q) /CSM/SS/SSE7-A/SSE702Q.Seq.d/                       1080   0.0
SSD101 (SSD101Q) /CSM/SS/SSD1-A/SSD101Q.Seq.d/                       1080   0.0
SSA444 (SSA444Q) /CSM/SS/SSA4-B/SSA444Q.Seq.d/                       1051   0.0
SSF320 (SSF320Q) /CSM/SS/SSF3-A/SSF320Q.Seq.d/                       1047   0.0
SSG272 (SSG272Q) /CSM/SS/SSG2-C/SSG272Q.Seq.d/                       1039   0.0
SSM257 (SSM257Q) /CSM/SS/SSM2-C/SSM257Q.Seq.d/                        969   0.0
SSC541 (SSC541Q) /CSM/SS/SSC5-B/SSC541Q.Seq.d/                        936   0.0
SSK225 (SSK225Q) /CSM/SS/SSK2-B/SSK225Q.Seq.d/                        922   0.0
own update 2002.12.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX132079|BX132079.1 Danio rerio genomic clone DKEY-87B3, genomic survey sequence.    36  0.015  3
AC008136|AC008136.4 Drosophila melanogaster, chromosome 3R, region 88D-88E, BAC clone BACR08H11, complete sequence.    48  0.15  1
AC017130|AC017130.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    48  0.15  1
AE003706|AE003706.3 Drosophila melanogaster chromosome 3R, section 44 of 118 of the complete sequence.    48  0.15  1
BX255900|BX255900.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-261C8.    48  0.15  1
BH261451|BH261451.1 CH230-90I24.TV CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-90I24, DNA sequence.    48  0.15  1
AC095660|AC095660.6 Rattus norvegicus clone CH230-7K16, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48  0.15  1
BH339179|BH339179.1 CH230-41C3.TV CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-41C3, DNA sequence.    48  0.15  1
AC005721|AC005721.3 Drosophila melanogaster, chromosome 3R, region 88D8-88E1, BAC clone BACR48E23, complete sequence.    48  0.15  1
AL935163|AL935163.7 Zebrafish DNA sequence from clone CH211-206K20.    48  0.15  1
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116550_6(AC116550|pid:none) Dictyostelium discoideum chromosom...    83   9e-15
AC116550_3(AC116550|pid:none) Dictyostelium discoideum chromosom...    82   2e-14
AX647673_1(AX647673|pid:none) Sequence 1865 from Patent EP1270724.     35   2.9
AE014187_226(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    34   3.8
AE017224_1001(AE017224|pid:none) Brucella abortus biovar 1 str. ...    34   3.8
AE008918_154(AE008918|pid:none) Brucella melitensis 16M chromoso...    34   3.8
CP000873_1093(CP000873|pid:none) Brucella canis ATCC 23365 chrom...    34   3.8
AE015928_3339(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    34   5.0
T22814(T22814) hypothetical protein F57A10.1 - Caenorhabditis el...    33   6.5
T25150(T25150) hypothetical protein T23D5.11 - Caenorhabditis el...    33   6.5
protein update 2009. 6.13
PSORT 

 psg: 0.80  gvh: 0.49  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for SSI253 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI253Z
3' end seq. 
>SSI253Z.Seq
----------ATAATACATACTTTCCACACCAAATGTATCGAACCAGTTTCATTCTTTGA
AGGAGGTGTAATTAGTGCAGATTTCAAATCTCAACAAATGTATGTCCATTTTGGATTAGT
TGCTGGTAATTCGACTGTTTGGGGTAAATATTGGGGATTTGGTTCAAATAGTACTGAATA
TGTTTTAATAAATGGTACATGCACTTCAAACAAATTATCATATCCATTCCCACCTTCTGT
TCCAAAATTCAAGAAAGTTGGTGAAACTAAAATTGGTCAAATAGATGTTGATGTAGTTAT
TATGAAACACCAAGAAAAGTATAATAACTATACCAGACAATGCACATTAATTCAAAAAGG
TACTTGCACACCAATGTCAAATAATGTTGGTAATATTGATAAATCAAACAAGGGTTTCAC
TTTAATGAATTTCTACAAATATGAAGGAAAAGCTCGTAAAGATAAATTCCAATTACCATC
AGAATGTTATGGTGTTCAACCAAGTGACTCAACTTCATCCTTTAGAATCAATACAAATAA
TGTTGCTCAAAATGTTCTTGGTCATAATGAAGATGAACCAAATAAAAAACAACAAAAAAC
ATTACCAAAATCAATTCCTTTCCATAATTCATTTCAGTAGAAAATGAATAAATTAAAATT
TTAATAAAAACCTATTTTTACATTGTGATTCACCAATTCTAAAAAAAAAAAAAAA
Length of 3' end seq. 705
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -