>SSI252 (SSI252Q) /CSM/SS/SSI2-C/SSI252Q.Seq.d/
ATTAAAATAGCTATAGATTTTTTTAATCAATCAAATTTATTATATGGATCAATTACTGAA
TTTTGTACACCAAAATATTGCCCATCAATGTCAGCAGGACCACAATATGAATTCCTTTGG
GCAGATGGTAAAGAAATTAAAAAACCAATTAGAGTTTCTGCACCAGCATATGTTGATTAT
TTAATGACATGGATTCAGGTACAATTAGATGATGAAGATTTTTTTCCAACTAAACCAACA
GAAGATATGCCAAAGAATTTTTTACCAACAATTAAAGCAATTTTTAAACGTTTATTTAGG
GTTTATGCACACATATATTATTCACATATGGATAGAGTATCAGTTTTGGGTGTTGAAGCT
CATTTAAATACAGCATTCCGTCATTTTTATTTATTTATTAAAGAATTTAATTTAGTTGAT
AAAAAAGAAATGTTACCATTACAAAATATTATTGATAAAATTAATGCGAGAAAAGATATT
TAAATGGTTTATCAAAAAAXXXXXXXXXXATAATAGAAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAAAATTCAACTTGTATTTTTAAAACAACTAATAATAAT
AGCTAAATAAATAAATAAATAAATAAATAATAAATAAATAAATAAAAAACAATAAATAAA
TTATAATGTGTGAGGTTTTTAAAATAAACCATCAAACAAGAAAAG

lk*l*iflinqiyymdqllnfvhqniahqcqqdhnmnsfgqmvkklknqleflhqhmlii
**hgfryn*mmkiffqlnqqkicqrifyqqlkqflnvylgfmhtyiihiwieyqfwvlkl
i*iqhsvifiyllknli*LIKKKCYHYKILLIKLMREKIFKWFIKK---

---NRNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKIQLVFLKQLIIIAK*ink*
innk*inkkq*inynv*gf*nkpsnkk

Frame A:
ikiaidffnqsnllygsitefctpkycpsmsagpqyeflwadgkeikkpirvsapayvdy
lmtwiqvqlddedffptkptedmpknflptikaifkrlfrvyahiyyshmdrvsvlgvea
hlntafrhfylfikefnlvdkkemlplqniidkinarkdi*mvyqk---

---iieiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiikfnlyf*nn****lnk*in
k*iink*iknnk*iimcevfkinhqtrk

Frame B:
lk*l*iflinqiyymdqllnfvhqniahqcqqdhnmnsfgqmvkklknqleflhqhmlii
**hgfryn*mmkiffqlnqqkicqrifyqqlkqflnvylgfmhtyiihiwieyqfwvlkl
i*iqhsvifiyllknli*LIKKKCYHYKILLIKLMREKIFKWFIKK---

---**k***********************************nstcifkttnnns*ink*i
nk**ink*ktinkl*cvrflk*tikqek

Frame C:
*nsyrff*sikfiiwiny*ilytkilpinvsrtti*iplgrw*rn*ktn*sfctsic*lf
ndmdsgtir**rffsn*tnrryakefftnn*snf*tfi*glcthilftyg*sisfgc*ss
fkysipsflfiy*ri*fs**krnvtitkyy**n*cekrylnglsk---

---NRNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKIQLVFLKQLIIIAK*ink*
innk*inkkq*inynv*gf*nkpsnkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI252 (SSI252Q) /CSM/SS/SSI2-C/SSI252Q.Seq.d/                        906   0.0
SSC369 (SSC369Q) /CSM/SS/SSC3-C/SSC369Q.Seq.d/                         72   1e-11
SSA606 (SSA606Q) /CSM/SS/SSA6-A/SSA606Q.Seq.d/                         72   1e-11
FC-AX23 (FC-AX23Q) /CSM/FC/FC-AX/FC-AX23Q.Seq.d/                       72   1e-11
SSI838 (SSI838Q) /CSM/SS/SSI8-B/SSI838Q.Seq.d/                         58   2e-07
SSG706 (SSG706Q) /CSM/SS/SSG7-A/SSG706Q.Seq.d/                         58   2e-07
SSG703 (SSG703Q) /CSM/SS/SSG7-A/SSG703Q.Seq.d/                         56   8e-07
VFD326 (VFD326Q) /CSM/VF/VFD3-B/VFD326Q.Seq.d/                         44   0.003
VHJ730 (VHJ730Q) /CSM/VH/VHJ7-B/VHJ730Q.Seq.d/                         42   0.012
VSK307 (VSK307Q) /CSM/VS/VSK3-A/VSK307Q.Seq.d/                         40   0.049

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BI513027|BI513027.1 BB160011A10D04.5 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160011A10D04 5', mRNA sequence.    60  4e-05  1
AC006280|AC006280.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    36  0.014  8
AX458473|AX458473.1 Sequence 19 from Patent WO0246454.            34  0.017  4
BU719746|BU719746.1 SJM2AGE05 SJM Schistosoma japonicum cDNA, mRNA sequence.    34  0.017  3
BU804481|BU804481.1 SJFBLF05 SJF Schistosoma japonicum cDNA, mRNA sequence.    34  0.018  3
AX344640|AX344640.1 Sequence 65 from Patent WO0200927.            34  0.019  4
BU718881|BU718881.1 SJM2COD02 SJM Schistosoma japonicum cDNA, mRNA sequence.    34  0.033  3
AC116987|AC116987.2 Dictyostelium discoideum chromosome 2 map 3527441-3568052 strain AX4, complete sequence.    34  0.034  6
CC058267|CC058267.1 ii51e05.g2 WGS-ZmaysF (DH5a methyl filtered) Zea mays genomic clone ii51e05, DNA sequence.    50  0.041  1
BZ774855|BZ774855.1 ii51e05.b1 WGS-ZmaysF (DH5a methyl filtered) Zea mays genomic clone ii51e05, DNA sequence.    50  0.041  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK150016_1(AK150016|pid:none) Mus musculus bone marrow macrophag...   213   7e-54
EF086786_1(EF086786|pid:none) Picea sitchensis clone WS02745_F16...   213   7e-54
(Q3T1J9) RecName: Full=Mps one binder kinase activator-like 1B; ...   212   9e-54
AK023321_1(AK023321|pid:none) Homo sapiens cDNA FLJ13259 fis, cl...   212   9e-54
BC045952_1(BC045952|pid:none) Danio rerio MOB1, Mps One Binder k...   211   2e-53
(Q7L9L4) RecName: Full=Mps one binder kinase activator-like 1A; ...   211   2e-53
BC122919_1(BC122919|pid:none) Xenopus tropicalis MOB1, Mps One B...   211   3e-53
AY647429_1(AY647429|pid:none) Xenopus laevis kinase regulatory s...   211   3e-53
EU284926_1(EU284926|pid:none) TSA: Elaeis guineensis EgEfMPOB001...   210   3e-53
BT045557_1(BT045557|pid:none) Salmo salar clone ssal-rgf-524-342...   210   3e-53

 psg: 0.72  gvh: 0.24  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SSI252 is nuc

>SSI252F.Seq
ATTAAAATAGCTATAGATTTTTTTAATCAATCAAATTTATTATATGGATCAATTACTGAA
TTTTGTACACCAAAATATTGCCCATCAATGTCAGCAGGACCACAATATGAATTCCTTTGG
GCAGATGGTAAAGAAATTAAAAAACCAATTAGAGTTTCTGCACCAGCATATGTTGATTAT
TTAATGACATGGATTCAGGTACAATTAGATGATGAAGATTTTTTTCCAACTAAACCAACA
GAAGATATGCCAAAGAATTTTTTACCAACAATTAAAGCAATTTTTAAACGTTTATTTAGG
GTTTATGCACACATATATTATTCACATATGGATAGAGTATCAGTTTTGGGTGTTGAAGCT
CATTTAAATACAGCATTCCGTCATTTTTATTTATTTATTAAAGAATTTAATTTAGTTGAT
AAAAAAGAAATGTTACCATTACAAAATATTATTGATAAAATTAATGCGAGAAAAGATATT
TAAATGGTTTATCAAAAAA----------

>SSI252Z.Seq
----------ATAATAGAAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAAAATTCAACTTGTATTTTTAAAACAACTAATAATAATAGCTAAATAAATAAATAAA
TAAATAAATAATAAATAAATAAATAAAAAACAATAAATAAATTATAATGTGTGAGGTTTT
TAAAATAAACCATCAAACAAGAAAAG

>SSI252P.Seq
ATTAAAATAGCTATAGATTTTTTTAATCAATCAAATTTATTATATGGATCAATTACTGAA
TTTTGTACACCAAAATATTGCCCATCAATGTCAGCAGGACCACAATATGAATTCCTTTGG
GCAGATGGTAAAGAAATTAAAAAACCAATTAGAGTTTCTGCACCAGCATATGTTGATTAT
TTAATGACATGGATTCAGGTACAATTAGATGATGAAGATTTTTTTCCAACTAAACCAACA
GAAGATATGCCAAAGAATTTTTTACCAACAATTAAAGCAATTTTTAAACGTTTATTTAGG
GTTTATGCACACATATATTATTCACATATGGATAGAGTATCAGTTTTGGGTGTTGAAGCT
CATTTAAATACAGCATTCCGTCATTTTTATTTATTTATTAAAGAATTTAATTTAGTTGAT
AAAAAAGAAATGTTACCATTACAAAATATTATTGATAAAATTAATGCGAGAAAAGATATT
TAAATGGTTTATCAAAAAA----------ATAATAGAAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAAAATTCAACTTGTATTTTTAAAACAACTAATAATAAT
AGCTAAATAAATAAATAAATAAATAAATAATAAATAAATAAATAAAAAACAATAAATAAA
TTATAATGTGTGAGGTTTTTAAAATAAACCATCAAACAAGAAAAG