>SSI251 (SSI251Q) /CSM/SS/SSI2-C/SSI251Q.Seq.d/
XXXXXXXXXXCAAGTTTATTTCATAATATTTTCAAAAAGAGACAATCTGTTACAAGTGTT
TCAGCAAATTCCTCACCTGTTATTGTTTCAAGTAATGGTGGTTTAAACAATAATAATCAT
AACAATATTTTACATGTTAGTAGTAGTAATATTAATGTTGATGGAGCATCTGCAAGTGCA
CCTCAATTTTCATCATCTTCATCGAAAAGAAGATTTAGTTTGGAGGATATTGTCAAAGCA
ATTACCATTAGATCTGGAAAAGGAAAGAATCCAAAGATTCGTTCAATGAAAGGACCTTTC
AATAGTGGAACAACTACAATGTTAAATCCAATTCAATTGATTGAACACATTGAAGAAAAT
TTAAATTCAACTCAAATTTCCTACCGTAGAAACTTTTATGTTTTTGATTGTAAAACTTTG
TGTCCAAGAAATGAAACAATCAATTTCGAAATTGAAGTATGTAAAGTAAATGGTATGGAT
ATGTATGGTATTAAATTTAAAAGATTATCTGGTGATGCTTGGTCATATAGTTCTTCTTGT
ATTAAAATAGTTGAATCTTTAAAACTTTAACTAAAAAAAAAAAAAAAAAAAATTATAATT
TTAAATTAAGACGGAATAATTATTTAATTATTTTTTTTTTGAAGAAAAAAAAAAAAAGCT
TTAGAAAAAAGGGTTTAAAAAAAAA

---SLFHNIFKKRQSVTSVSANSSPVIVSSNGGLNNNNHNNILHVSSSNINVDGASASAP
QFSSSSSKRRFSLEDIVKAITIRSGKGKNPKIRSMKGPFNSGTTTMLNPIQLIEHIEENL
NSTQISYRRNFYVFDCKTLCPRNETINFEIEVCKVNGMDMYGIKFKRLSGDAWSYSSSCI
KIVESLKL*lkkkkkkiiiln*dgiii*lfff*rkkkkalekrv*kk

Frame A:
---kfis*yfqketicykcfskfltcycfk*wwfkq**s*qyftc****y*c*wsickct
sifiifiekki*fggycqsnyh*iwkrkeskdsfnertfq*wnnynvksnsid*th*rkf
kfnsnflp*kllcf*l*nfvskk*nnqfrn*sm*skwygyvwy*i*kiiw*clvi*ffly
*ns*ifktltkkkkkknynfklrrnnyliifflkkkkksfrkkglkk


Frame B:
---SLFHNIFKKRQSVTSVSANSSPVIVSSNGGLNNNNHNNILHVSSSNINVDGASASAP
QFSSSSSKRRFSLEDIVKAITIRSGKGKNPKIRSMKGPFNSGTTTMLNPIQLIEHIEENL
NSTQISYRRNFYVFDCKTLCPRNETINFEIEVCKVNGMDMYGIKFKRLSGDAWSYSSSCI
KIVESLKL*lkkkkkkiiiln*dgiii*lfff*rkkkkalekrv*kk


Frame C:
---vyfiifskrdnllqvfqqiphlllfqvmvv*tiiiitifymlvvvilmlmehlqvhl
nfhhlhrkedlvwrilskqlpldlekeriqrfvq*kdlsiveqlqc*iqfn*lntlkki*
iqlkfptvetfmflivklcvqemkqsisklkyvk*mvwicmvlnlkdylvmlghivllvl
k*lnl*nfn*kkkkkkl*f*ikte*lfnyfffeekkkkl*kkgfkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI251 (SSI251Q) /CSM/SS/SSI2-C/SSI251Q.Seq.d/                       1114   0.0
AFO481 (AFO481Q) /CSM/AF/AFO4-D/AFO481Q.Seq.d/                       1063   0.0
SSC172 (SSC172Q) /CSM/SS/SSC1-C/SSC172Q.Seq.d/                       1001   0.0
AFI727 (AFI727Q) /CSM/AF/AFI7-B/AFI727Q.Seq.d/                        870   0.0
SLE575 (SLE575Q) /CSM/SL/SLE5-D/SLE575Q.Seq.d/                        696   0.0
CHO563 (CHO563Q) /CSM/CH/CHO5-C/CHO563Q.Seq.d/                        601   e-171
SSH860 (SSH860Q) /CSM/SS/SSH8-C/SSH860Q.Seq.d/                        466   e-130
SLH695 (SLH695Q) /CSM/SL/SLH6-D/SLH695Q.Seq.d/                        103   3e-21
VSK176 (VSK176Q) /CSM/VS/VSK1-D/VSK176Q.Seq.d/                         44   0.003
VSC840 (VSC840Q) /CSM/VS/VSC8-B/VSC840Q.Seq.d/                         44   0.003

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    40  1e-07  12
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36  3e-05  10
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    40  4e-05  9
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36  4e-04  8
AC006280|AC006280.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    42  6e-04  9
AE014837|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence.    40  7e-04  7
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    44  0.002  5
AC115680|AC115680.2 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.    34  0.002  8
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36  0.002  7
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    38  0.002  10

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54MV2) RecName: Full=Probable serine/threonine-protein kinase ...   269   5e-71
CR761185_1(CR761185|pid:none) Xenopus tropicalis finished cDNA, ...    65   2e-09
BC106635_1(BC106635|pid:none) Xenopus laevis p69Eg3, mRNA (cDNA ...    63   7e-09
S52244(S52244)p69Eg3 protein - African clawed frog                     63   7e-09
EF446902_1(EF446902|pid:none) Bos taurus maternal embryonic leuc...    60   5e-08
AK222811_1(AK222811|pid:none) Homo sapiens mRNA for maternal emb...    60   8e-08
AK129076_1(AK129076|pid:none) Mus musculus mRNA for mKIAA0175 pr...    60   8e-08
AK293284_1(AK293284|pid:none) Homo sapiens cDNA FLJ50438 complet...    60   8e-08
AK011932_1(AK011932|pid:none) Mus musculus 10 days embryo whole ...    60   8e-08
AK300821_1(AK300821|pid:none) Homo sapiens cDNA FLJ54386 complet...    60   8e-08

 psg: 0.86  gvh: 0.47  alm: 0.52  top: 0.63  tms: 0.00  mit: 0.47  mip: 0.12
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: mitochondrial
	 28.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for SSI251 is mit

>SSI251Z.Seq
----------CAAGTTTATTTCATAATATTTTCAAAAAGAGACAATCTGTTACAAGTGTT
TCAGCAAATTCCTCACCTGTTATTGTTTCAAGTAATGGTGGTTTAAACAATAATAATCAT
AACAATATTTTACATGTTAGTAGTAGTAATATTAATGTTGATGGAGCATCTGCAAGTGCA
CCTCAATTTTCATCATCTTCATCGAAAAGAAGATTTAGTTTGGAGGATATTGTCAAAGCA
ATTACCATTAGATCTGGAAAAGGAAAGAATCCAAAGATTCGTTCAATGAAAGGACCTTTC
AATAGTGGAACAACTACAATGTTAAATCCAATTCAATTGATTGAACACATTGAAGAAAAT
TTAAATTCAACTCAAATTTCCTACCGTAGAAACTTTTATGTTTTTGATTGTAAAACTTTG
TGTCCAAGAAATGAAACAATCAATTTCGAAATTGAAGTATGTAAAGTAAATGGTATGGAT
ATGTATGGTATTAAATTTAAAAGATTATCTGGTGATGCTTGGTCATATAGTTCTTCTTGT
ATTAAAATAGTTGAATCTTTAAAACTTTAACTAAAAAAAAAAAAAAAAAAAATTATAATT
TTAAATTAAGACGGAATAATTATTTAATTATTTTTTTTTTGAAGAAAAAAAAAAAAAGCT
TTAGAAAAAAGGGTTTAAAAAAAAA