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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI248
Library SS
(Link to library)
Clone ID SSI248
Atlas ID
NBRP ID
dictyBase ID
Link to Contig Contig-U16127-1
Original site URL
Representative seq. ID SSI248P
(Link to Original site)
Representative DNA sequence 
>SSI248 (SSI248Q) /CSM/SS/SSI2-B/SSI248Q.Seq.d/
AAAAAATTGTAAATTATTAAAATTGTATTTTATAAAAAAAAAAATTAATAAAAATGAAAT
TCAATACTATCTTTTTGGTTCTTTCGATTGTAAAATTTATTTTAATCAGTGCACAATCAT
GTCCATTTAGCCAAAGTATAATTAATGGGGCATCTGCAACTTTTTATACTGCTATCGATG
CAGGTAATTGTGGATTTGAAAAATTAAATGGTCCATTGGGTCCTGGNNACTATATGATTG
CAGCTCTTGGATCAAAACTTTATCAAAATGGTGCTCAATGTGGTCAATGTTTTAAAATTT
CAAATTCTAAAAATGCTTCAGTTACAGTAATGGCAACTGATTCATGTCATGATGCAGGTT
ATTGTCAAAGAGATAACCATTTTGATTTATCACCAGCTGCATTTTCAATTTTGGGGCCAC
AATCTCAAGGTGTATTAGATGGATTATCATATGTAAAAGTACCATGTNAAGTTTCAGGAA
ATGTTAAAATTATGATGAAAGATGGTAGTAATGATTTTTGGACATCTTTCTTTGTATTCA
ATAGTAAAGTTATAATTAAACAAGTTTCAATTAAATTATCAAATAGTAATCAATTTGTTC
CACTATXXXXXXXXXXTCAAATAGTAATCAATTTGTTCCACTATCCCAAACCACATATAA
CTACTGGCCAACAAGTATTACTGGTGGACAATTTCATGTTAGAATCGAATCAATTGGTGG
AGAATTTATTTATGTAACTATTCCAAAAGTAGAAAGCAGAAAAGTTTATGAAACTTCAGG
CCAATTTTCAACATCTTGTTCCAATTTAAATGAAAATAATCCAATTAATTATAAACCTCA
AACATTTAATTCTCAACAAACTTCAAACAATCAAAATTCAAATACTCAAACTCCAACAAA
ACAACCATCTCCAAACTCTCAAAACTTTATTCCATCATATTGCCAACAATATATCCAAAA
ACCAAATTATATCTTTGCAAAAGAGTCAAAAGAAATGTTGGTACTAAATGAAAATGAAAA
TATTGAATCAAATTCTTTAAAACTTTTACCAAATGTCTTGTTATTAATATTAATAATATT
ATTAAATATTAATTTTTAAAATGTAATTTCAAAATTTTTAGTGATATTAATATTAATTAT
TTATTTGTAAAATATAATTTTTTAGTTAAAATAAAAACCTGTAATAATATTTAAATAAAT
TTTAAAAAAAAA
sequence update 1998.11.10
Translated Amino Acid sequence 
kivny*ncil*KKKLIKMKFNTIFLVLSIVKFILISAQSCPFSQSIINGASATFYTAIDA
GNCGFEKLNGPLGPGXYMIAALGSKLYQNGAQCGQCFKISNSKNASVTVMATDSCHDAGY
CQRDNHFDLSPAAFSILGPQSQGVLDGLSYVKVPCXVSGNVKIMMKDGSNDFWTSFFVFN
SKVIIKQVSIKLSNSNQFVPL---

---SNSNQFVPLSQTTYNYWPTSITGGQFHVRIESIGGEFIYVTIPKVESRKVYETSGQF
STSCSNLNENNPINYKPQTFNSQQTSNNQNSNTQTPTKQPSPNSQNFIPSYCQQYIQKPN
YIFAKESKEMLVLNENENIESNSLKLLPNVLLLILIILLNINF*nviskflvililiiyl
*niif*lk*kpviifk*ilkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kkl*iikivfykkkn**k*nsilsfwffrl*nlf*svhnhvhlakv*lmghlqlfillsm
qvivdlkn*mvhwvlxti*lqlldqnfikmvlnvvnvlkfqilkmlqlq*wqlihvmmqv
ivkeitiliyhqlhfqfwghnlkvy*mdyhm*kyhvkfqemlkl**kmvvmifghlslys
ivkl*lnkfqlnyqivinlfhy---

---SNSNQFVPLSQTTYNYWPTSITGGQFHVRIESIGGEFIYVTIPKVESRKVYETSGQF
STSCSNLNENNPINYKPQTFNSQQTSNNQNSNTQTPTKQPSPNSQNFIPSYCQQYIQKPN
YIFAKESKEMLVLNENENIESNSLKLLPNVLLLILIILLNINF*nviskflvililiiyl
*niif*lk*kpviifk*ilkk

Frame B:
knckllklyfikkkinkneiqyylfgsfdckiyfnqctimsi*pkyn*wgicnflycyrc
r*lwi*kikwsigswxlydcsswiktlskwcsmwsmf*nfkf*kcfsysngn*fms*crl
lskr*pf*fitscifnfgatisrcirwiiickstmxsfrkc*nyderw***fldiflciq
**syn*tsfn*iik**sicst---

---qivinlfhypkphittgqqvllvdnfmlesnqlvenlfm*lfqk*kaekfmklqanf
qhlvpi*mkiiqliinlkhlilnklqtikiqilklqqnnhlqtlktlfhhiannisknqi
islqksqkkcwy*mkmkilnqil*nfyqmscy*y**yy*ilifkm*fqnf**y*y*lfic
ki*ffs*nknl**ylnkf*kk

Frame C:
kivny*ncil*KKKLIKMKFNTIFLVLSIVKFILISAQSCPFSQSIINGASATFYTAIDA
GNCGFEKLNGPLGPGXYMIAALGSKLYQNGAQCGQCFKISNSKNASVTVMATDSCHDAGY
CQRDNHFDLSPAAFSILGPQSQGVLDGLSYVKVPCXVSGNVKIMMKDGSNDFWTSFFVFN
SKVIIKQVSIKLSNSNQFVPL---

---k**sicstipnhi*llankyywwtisc*nrinwwriylcnysksrkqksl*nfrpif
nilfqfk*k*sn*l*tsni*fstnfkqskfkysnsnkttisklsklysiilptiypktkl
ylckrvkrnvgtk*k*ky*ikffktftkclvininniiky*flkcnfkifsdininylfv
kynflvkiktcnni*infkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI248 (SSI248Q) /CSM/SS/SSI2-B/SSI248Q.Seq.d/                       1540   0.0
SSE659 (SSE659Q) /CSM/SS/SSE6-C/SSE659Q.Seq.d/                       1096   0.0
SFL101 (SFL101Q) /CSM/SF/SFL1-A/SFL101Q.Seq.d/                        462   e-129
SSD667 (SSD667Q) /CSM/SS/SSD6-C/SSD667Q.Seq.d/                        214   2e-54
SSK180 (SSK180Q) /CSM/SS/SSK1-D/SSK180Q.Seq.d/                         98   4e-19
SSG392 (SSG392Q) /CSM/SS/SSG3-D/SSG392Q.Seq.d/                         98   4e-19
SSD284 (SSD284Q) /CSM/SS/SSD2-D/SSD284Q.Seq.d/                         98   4e-19
CHO772 (CHO772Q) /CSM/CH/CHO7-C/CHO772Q.Seq.d/                         98   4e-19
SSM857 (SSM857Q) /CSM/SS/SSM8-C/SSM857Q.Seq.d/                         84   6e-15
FC-BF24 (FC-BF24Q) /CSM/FC/FC-BF/FC-BF24Q.Seq.d/                       84   6e-15
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116979|AC116979.2 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence.   662  0.0  7
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.   234  2e-76  8
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          36  0.008  8
AC144515|AC144515.6 Medicago truncatula clone mth2-5j8, WORKING DRAFT SEQUENCE, 4 ordered pieces.    52  0.013  5
BZ622260|BZ622260.1 ig77c10.g1 WGS-ZmaysF (DH5a methyl filtered) Zea mays genomic clone ig77c10 5', DNA sequence.    52  0.016  1
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    38  0.034  12
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    34  0.041  11
AC117481|AC117481.8 Homo sapiens 3 BAC RP11-642N14 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    50  0.050  6
AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.    40  0.072  6
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    38  0.099  12
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000113_3477(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    86   1e-17
CP000909_214(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    69   2e-11
AP007164_624(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    72   3e-11
AM270053_86(AM270053|pid:none) Aspergillus niger contig An03c012...    71   7e-11
AM711865_20(AM711865|pid:none) Clavibacter michiganensis subsp. ...    62   7e-11
(Q7XT39) RecName: Full=Expansin-B5; AltName: Full=OsEXPB5; AltNa...    69   4e-10
EU492895_1(EU492895|pid:none) Hordeum vulgare alpha-expansin EXP...    68   7e-10
AM920437_1589(AM920437|pid:none) Penicillium chrysogenum Wiscons...    68   7e-10
(Q40637) RecName: Full=Expansin-A3; AltName: Full=OsEXPA3; AltNa...    67   1e-09
BT064509_1(BT064509|pid:none) Zea mays full-length cDNA clone ZM...    67   1e-09
protein update 2009. 6.13
PSORT 

 psg: 0.98  gvh: 0.68  alm: 0.22  top: 0.20  tms: 0.07  mit: 0.40  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 1.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for SSI248 is pla
5' end seq. ID SSI248F
5' end seq. 
>SSI248F.Seq
AAAAAATTGTAAATTATTAAAATTGTATTTTATAAAAAAAAAAATTAATAAAAATGAAAT
TCAATACTATCTTTTTGGTTCTTTCGATTGTAAAATTTATTTTAATCAGTGCACAATCAT
GTCCATTTAGCCAAAGTATAATTAATGGGGCATCTGCAACTTTTTATACTGCTATCGATG
CAGGTAATTGTGGATTTGAAAAATTAAATGGTCCATTGGGTCCTGGNNACTATATGATTG
CAGCTCTTGGATCAAAACTTTATCAAAATGGTGCTCAATGTGGTCAATGTTTTAAAATTT
CAAATTCTAAAAATGCTTCAGTTACAGTAATGGCAACTGATTCATGTCATGATGCAGGTT
ATTGTCAAAGAGATAACCATTTTGATTTATCACCAGCTGCATTTTCAATTTTGGGGCCAC
AATCTCAAGGTGTATTAGATGGATTATCATATGTAAAAGTACCATGTNAAGTTTCAGGAA
ATGTTAAAATTATGATGAAAGATGGTAGTAATGATTTTTGGACATCTTTCTTTGTATTCA
ATAGTAAAGTTATAATTAAACAAGTTTCAATTAAATTATCAAATAGTAATCAATTTGTTC
CACTAT----------
Length of 5' end seq. 606
3' end seq. ID SSI248Z
3' end seq. 
>SSI248Z.Seq
----------TCAAATAGTAATCAATTTGTTCCACTATCCCAAACCACATATAACTACTG
GCCAACAAGTATTACTGGTGGACAATTTCATGTTAGAATCGAATCAATTGGTGGAGAATT
TATTTATGTAACTATTCCAAAAGTAGAAAGCAGAAAAGTTTATGAAACTTCAGGCCAATT
TTCAACATCTTGTTCCAATTTAAATGAAAATAATCCAATTAATTATAAACCTCAAACATT
TAATTCTCAACAAACTTCAAACAATCAAAATTCAAATACTCAAACTCCAACAAAACAACC
ATCTCCAAACTCTCAAAACTTTATTCCATCATATTGCCAACAATATATCCAAAAACCAAA
TTATATCTTTGCAAAAGAGTCAAAAGAAATGTTGGTACTAAATGAAAATGAAAATATTGA
ATCAAATTCTTTAAAACTTTTACCAAATGTCTTGTTATTAATATTAATAATATTATTAAA
TATTAATTTTTAAAATGTAATTTCAAAATTTTTAGTGATATTAATATTAATTATTTATTT
GTAAAATATAATTTTTTAGTTAAAATAAAAACCTGTAATAATATTTAAATAAATTTTAAA
AAAAAA
Length of 3' end seq. 596
Connected seq. ID SSI248P
Connected seq. 
>SSI248P.Seq
AAAAAATTGTAAATTATTAAAATTGTATTTTATAAAAAAAAAAATTAATAAAAATGAAAT
TCAATACTATCTTTTTGGTTCTTTCGATTGTAAAATTTATTTTAATCAGTGCACAATCAT
GTCCATTTAGCCAAAGTATAATTAATGGGGCATCTGCAACTTTTTATACTGCTATCGATG
CAGGTAATTGTGGATTTGAAAAATTAAATGGTCCATTGGGTCCTGGNNACTATATGATTG
CAGCTCTTGGATCAAAACTTTATCAAAATGGTGCTCAATGTGGTCAATGTTTTAAAATTT
CAAATTCTAAAAATGCTTCAGTTACAGTAATGGCAACTGATTCATGTCATGATGCAGGTT
ATTGTCAAAGAGATAACCATTTTGATTTATCACCAGCTGCATTTTCAATTTTGGGGCCAC
AATCTCAAGGTGTATTAGATGGATTATCATATGTAAAAGTACCATGTNAAGTTTCAGGAA
ATGTTAAAATTATGATGAAAGATGGTAGTAATGATTTTTGGACATCTTTCTTTGTATTCA
ATAGTAAAGTTATAATTAAACAAGTTTCAATTAAATTATCAAATAGTAATCAATTTGTTC
CACTAT----------TCAAATAGTAATCAATTTGTTCCACTATCCCAAACCACATATAA
CTACTGGCCAACAAGTATTACTGGTGGACAATTTCATGTTAGAATCGAATCAATTGGTGG
AGAATTTATTTATGTAACTATTCCAAAAGTAGAAAGCAGAAAAGTTTATGAAACTTCAGG
CCAATTTTCAACATCTTGTTCCAATTTAAATGAAAATAATCCAATTAATTATAAACCTCA
AACATTTAATTCTCAACAAACTTCAAACAATCAAAATTCAAATACTCAAACTCCAACAAA
ACAACCATCTCCAAACTCTCAAAACTTTATTCCATCATATTGCCAACAATATATCCAAAA
ACCAAATTATATCTTTGCAAAAGAGTCAAAAGAAATGTTGGTACTAAATGAAAATGAAAA
TATTGAATCAAATTCTTTAAAACTTTTACCAAATGTCTTGTTATTAATATTAATAATATT
ATTAAATATTAATTTTTAAAATGTAATTTCAAAATTTTTAGTGATATTAATATTAATTAT
TTATTTGTAAAATATAATTTTTTAGTTAAAATAAAAACCTGTAATAATATTTAAATAAAT
TTTAAAAAAAAA
Length of connected seq. 1202
Full length Seq ID -
Full length Seq. -
Length of full length seq. -