SSI247
Library SS
(Link to library)
Clone ID SSI247
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12269-1
Original site URL
Representative seq. ID SSI247Z
(Link to Original site)
Representative DNA sequence
>SSI247 (SSI247Q) /CSM/SS/SSI2-B/SSI247Q.Seq.d/
XXXXXXXXXXGTTAAAAGGTATGGCATTAATTGGTGGATCAATGTTTGCAGGTATTAGTA
TTTATATTCAAACTGTCGAACATCCAGCTCGTTCAACATTACCAACTGAATTTGCAGTTA
ATGAATGGCGTGAAAGTTTTAAAAAGGCCGCTCCATTACAATCTTCTCTTGCTGCAGTTT
CTGGTATCGCTTCGTTGCTTACTTTTGGCTCCATTGCAAAGGCATCCTGCAAGACAATCA
ACAAAGTAATCGTCAAAGCCACAGAAGATTCAGTTCGTCATTGTTGCCAATGTAATGGTT
TAGGTTGGTTGCTAAGTGGTGGTTTAATGCTTTCCATTATTCCATTCACTTTATTAGCCA
TTATGCCAGTTAATAAGAAATTACAATCCAAAGAACTTGATACCTTTGCTGATGATACTC
GTCAATTATTGGCTCAATGGGGTGAATTACATTCAGTTCGTTCAGTTCTTTCACTCTCTG
CGGTTGCAATTATGGGTTACAAAATCTTTAGACACTCCCATTTGTTAATTAAATCTTAAA
AACATGTTATCATTAAGATGAAATTACTTTCATAATCATTACCTATTTAAATTTTAAAAT
GATATTTTATAAAATTAAAAATAAAATAAAATAATATATATAATTACAAAAATTACAAAT
AGAAAATAAATAAATAAATAAATAAAAAAAATTACAAAAAGT
sequence update 1997.12.31
Translated Amino Acid sequence
---LKGMALIGGSMFAGISIYIQTVEHPARSTLPTEFAVNEWRESFKKAAPLQSSLAAVS
GIASLLTFGSIAKASCKTINKVIVKATEDSVRHCCQCNGLGWLLSGGLMLSIIPFTLLAI
MPVNKKLQSKELDTFADDTRQLLAQWGELHSVRSVLSLSAVAIMGYKIFRHSHLLIKS*k
hviikmklls*slpi*ilk*yfiklkik*nniynyknyk*kink*inkknykk


Translated Amino Acid sequence (All Frames)
Frame A:
---LKGMALIGGSMFAGISIYIQTVEHPARSTLPTEFAVNEWRESFKKAAPLQSSLAAVS
GIASLLTFGSIAKASCKTINKVIVKATEDSVRHCCQCNGLGWLLSGGLMLSIIPFTLLAI
MPVNKKLQSKELDTFADDTRQLLAQWGELHSVRSVLSLSAVAIMGYKIFRHSHLLIKS*k
hviikmklls*slpi*ilk*yfiklkik*nniynyknyk*kink*inkknykk


Frame B:
---*kvwh*lvdqclqvlvfifklsniqlvqhyqlnlqlmngvkvlkrplhynllllqfl
vslrclllaplqrhparqstk*sskpqkiqfvivanvmv*vgc*vvv*cfplfhsly*pl
cqlirnynpknlipllmilvnywlngvnyiqfvqffhslrlqlwvtksldtpic*lnlkn
mlslr*nyfhnhylfkf*ndil*n*k*nkiiyiitkitnrk*ink*ikkitks


Frame C:
---kryginwwinvcry*ylysncrtsssfnitn*ics**ma*kf*kgrsitifsccsfw
yrfvayfwlhckgilqdnqqsnrqshrrfsssllpm*wfrlvakwwfnafhysihfishy
as**eitiqrt*ylc**yssiigsmg*itfssfssftlcgcnyglqnl*tlpfvn*ilkt
cyh*deitfiiitylnfkmifykiknkik*yi*lqklqienk*ink*kklqk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSI247 (SSI247Q) /CSM/SS/SSI2-B/SSI247Q.Seq.d/ 1136 0.0
SSI513 (SSI513Q) /CSM/SS/SSI5-A/SSI513Q.Seq.d/ 1120 0.0
SSE766 (SSE766Q) /CSM/SS/SSE7-C/SSE766Q.Seq.d/ 1120 0.0
SSF379 (SSF379Q) /CSM/SS/SSF3-D/SSF379Q.Seq.d/ 1112 0.0
CHN810 (CHN810Q) /CSM/CH/CHN8-A/CHN810Q.Seq.d/ 1037 0.0
SSC649 (SSC649Q) /CSM/SS/SSC6-C/SSC649Q.Seq.d/ 1027 0.0
SSA494 (SSA494Q) /CSM/SS/SSA4-D/SSA494Q.Seq.d/ 1019 0.0
VSC823 (VSC823Q) /CSM/VS/VSC8-A/VSC823Q.Seq.d/ 1013 0.0
SSE119 (SSE119Q) /CSM/SS/SSE1-A/SSE119Q.Seq.d/ 1001 0.0
SSM687 (SSM687Q) /CSM/SS/SSM6-D/SSM687Q.Seq.d/ 999 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 1120 0.0 1
AC008331|AC008331.7 Drosophila melanogaster, chromosome 2L, region 29D-29E, BAC clone BACR02B16, complete sequence. 42 1.5 3
AC134619|AC134619.2 Homo sapiens BAC clone RP11-1367K15 from 7, complete sequence. 44 2.3 1
AC110977|AC110977.5 Rattus norvegicus clone CH230-167N24, WORKING DRAFT SEQUENCE, 1 ordered piece. 44 2.3 1
AC131866|AC131866.2 Rattus norvegicus clone CH230-178O24, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 44 2.3 1
AQ043011|AQ043011.1 CIT-HSP-2336J24.TR CIT-HSP Homo sapiens genomic clone 2336J24, genomic survey sequence. 44 2.3 1
AC006457|AC006457.4 Homo sapiens PAC clone RP5-1193P9 from 7p11.2-q11.2, complete sequence. 44 2.3 1
AC127700|AC127700.2 Homo sapiens PAC clone RP5-1012J16 from 7, complete sequence. 44 2.3 1
AC122133|AC122133.4 Homo sapiens BAC clone RP11-220H4 from 7, complete sequence. 44 2.3 1
AC134883|AC134883.2 Homo sapiens chromosome UNK clone RP11-1197M23, WORKING DRAFT SEQUENCE, 25 unordered pieces. 44 2.3 1
dna update 2003. 7.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116957_86(AC116957|pid:none) Dictyostelium discoideum chromoso... 281 2e-74
CP001389_2024(CP001389|pid:none) Rhizobium sp. NGR234, complete ... 70 5e-11
CP000738_2005(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 68 2e-10
AL591688_2147(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 64 4e-09
CP001349_1382(CP001349|pid:none) Methylobacterium nodulans ORS 2... 60 6e-08
CP001349_3517(CP001349|pid:none) Methylobacterium nodulans ORS 2... 52 2e-05
AF143679_1(AF143679|pid:none) Homo sapiens lost in inflammatory ... 33 8.3

protein update 2009. 6.13
PSORT

psg: 0.93 gvh: 0.54 alm: 0.27 top: 0.37 tms: 0.20 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

44.0 %: endoplasmic reticulum
20.0 %: mitochondrial
8.0 %: extracellular, including cell wall
8.0 %: plasma membrane
4.0 %: vacuolar
4.0 %: Golgi
4.0 %: nuclear
4.0 %: vesicles of secretory system
4.0 %: cytoplasmic

>> prediction for SSI247 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI247Z
3' end seq.
>SSI247Z.Seq
----------GTTAAAAGGTATGGCATTAATTGGTGGATCAATGTTTGCAGGTATTAGTA
TTTATATTCAAACTGTCGAACATCCAGCTCGTTCAACATTACCAACTGAATTTGCAGTTA
ATGAATGGCGTGAAAGTTTTAAAAAGGCCGCTCCATTACAATCTTCTCTTGCTGCAGTTT
CTGGTATCGCTTCGTTGCTTACTTTTGGCTCCATTGCAAAGGCATCCTGCAAGACAATCA
ACAAAGTAATCGTCAAAGCCACAGAAGATTCAGTTCGTCATTGTTGCCAATGTAATGGTT
TAGGTTGGTTGCTAAGTGGTGGTTTAATGCTTTCCATTATTCCATTCACTTTATTAGCCA
TTATGCCAGTTAATAAGAAATTACAATCCAAAGAACTTGATACCTTTGCTGATGATACTC
GTCAATTATTGGCTCAATGGGGTGAATTACATTCAGTTCGTTCAGTTCTTTCACTCTCTG
CGGTTGCAATTATGGGTTACAAAATCTTTAGACACTCCCATTTGTTAATTAAATCTTAAA
AACATGTTATCATTAAGATGAAATTACTTTCATAATCATTACCTATTTAAATTTTAAAAT
GATATTTTATAAAATTAAAAATAAAATAAAATAATATATATAATTACAAAAATTACAAAT
AGAAAATAAATAAATAAATAAATAAAAAAAATTACAAAAAGT
Length of 3' end seq. 692
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -