SSI232
Library SS
(Link to library)
Clone ID SSI232
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11478-1|Contig-U13421-1
Original site URL
Representative seq. ID SSI232P
(Link to Original site)
Representative DNA sequence
>SSI232 (SSI232Q) /CSM/SS/SSI2-B/SSI232Q.Seq.d/
ATTTATTTATTTATTTATTTTCTTTTTTTGTAATATTATTTTAATAATATTAATAGTAAT
ACTAAAAGATGGCATTTGGTAAAACGAAAAAATATAAGAGAATTGTTAAAACGATTTTCC
CTCAAGTTGAAGGTGGTGAAATGCAATTAGGTAATATTAGTAAATTAGTTTATTTTTGCG
AAATGAGTCCAGAGCAACTTCAAAAGGTTGGACCTTATATAGAGGCAAAAGCACAAAAGA
ATTTATCAAAAAAAAGGTTAGTTTATGTTTCAACTTGTATCATTATCATTAGAGAACTTA
TCATTGGTTGTAGAAAACATTTAGCATTATTCTCTGGTAATGCTACAAGATTAATGAAAA
TATTATTAATTCAAACTGAATATCCATCATTACAAATTGAAGCAACTGAAACCTTTATTA
GATTTGCATCAGTTCAAGATGATTCAAATCAAATACCACCAGAAATTGATGAATTTATAA
AGTATTTTATTATAATGGCAAAGAATATGGATAATGATGATACAATGAGAAGAACTATTA
GAGGTGAAGGTTTAAGAGGTGTAACGGCATATGTTTCATTAGCAAGTTTAACTGACGATT
TAGATACTTTTATTACAAAACCATACAGATATCATTTATACAATTTTAGATAATATGCXX
XXXXXXXXTCACAAATTATTCAATTTAATAATAATGATGGTGTTTTGGAATTTTTAAATA
ATTGTTCAAAACCAATTATTGAAACAATAATTAGTGGATTAAAGAGTAAAAATAATCAAC
CAGATAATATTATATCAATTTTTAAAACCTTGGTAGCATTATTAATTAGAGAAAAGAGTA
AACAAATTCAATATTCAATTCCAATGTTATTAAAACTTGAATCAGAAATTGATGATAATA
ATAATAGTAATCAGTTACCAATTAGACTTGTTAGATCAATTCATTTATTGATTTCATCTT
ATTTAATTGTAGTTGCAAGATTATATAGATCAAAAGAGTTGGAAGATTATGTTGAACAAG
TTTCAAATTATCGTAAATCAATGAATATTCATTGTAAATATTTATTATTTGATATAAAGA
GTTTAAGTGGTTTAGTAATTGCAAACACTCAAAAACATATTTATTCTGATCAAGATCAAG
ATATTTCAACACTTGTTAGTGGTTCTTCTTCTTCTTCCTCAACTACAATTGCTACAACTA
AAATTACAACTCAAACTACTCTTGTAACTTCAACAACAATTGAAGAAACTATTACTACTC
AAGAAACTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998.11.10
Translated Amino Acid sequence
iylfiyflfl*yyfnninsntkrwhlvkrknirellkrfslklkvvkcn*vilvn*fifa
k*vqsnfkrldli*rqkhkriyqkkg*fmfqlvslslenlslvveni*hyslvmlqd**k
yy*fklnihhyklkqlkplldlhqfkmiqikyhqklmnl*sill*wqriwimmiq*eell
evkv*ev*rhmfh*qv*lti*ILLLQNHTDIIYTILDNM---

---SQIIQFNNNDGVLEFLNNCSKPIIETIISGLKSKNNQPDNIISIFKTLVALLIREKS
KQIQYSIPMLLKLESEIDDNNNSNQLPIRLVRSIHLLISSYLIVVARLYRSKELEDYVEQ
VSNYRKSMNIHCKYLLFDIKSLSGLVIANTQKHIYSDQDQDISTLVSGSSSSSSTTIATT
KITTQTTLVTSTTIEETITTQETFEKKKKKKKKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
iylfiyflfl*yyfnninsntkrwhlvkrknirellkrfslklkvvkcn*vilvn*fifa
k*vqsnfkrldli*rqkhkriyqkkg*fmfqlvslslenlslvveni*hyslvmlqd**k
yy*fklnihhyklkqlkplldlhqfkmiqikyhqklmnl*sill*wqriwimmiq*eell
evkv*ev*rhmfh*qv*lti*ILLLQNHTDIIYTILDNM---

---SQIIQFNNNDGVLEFLNNCSKPIIETIISGLKSKNNQPDNIISIFKTLVALLIREKS
KQIQYSIPMLLKLESEIDDNNNSNQLPIRLVRSIHLLISSYLIVVARLYRSKELEDYVEQ
VSNYRKSMNIHCKYLLFDIKSLSGLVIANTQKHIYSDQDQDISTLVSGSSSSSSTTIATT
KITTQTTLVTSTTIEETITTQETFEKKKKKKKKKKKK

Frame B:
fiylfifffcniiliilivilkdgiw*neki*enc*ndfpss*rw*nair*y**islflr
nesratskgwtlyrgkstkefikkkvslcfnlyhyh*rtyhwl*ktfsiilw*cykinen
iinsn*isiitn*sn*nly*icissr*fksnttrn**iykvfyyngkeyg***ynekny*
r*rfkrcngicfiskfn*rfryfyyktiqisfiqf*iic---

---hklfnliimmvfwnf*iivqnqllkq*lvd*rvkiinqiilyqflkpw*hy*lekrv
nkfniqfqcy*nlnqklmiiiivisyqldlldqfiy*fhli*l*lqdyidqkswkimlnk
fqiivnq*ifivniyyli*rv*vv**lqtlknifilikikifqhllvvllllpqlqllql
klqlklll*lqqqlkkllllkkllkkkkkkkkkkkkk

Frame C:
lfiylfsffvilf**y***y*kmafgktkkykrivktifpqveggemqlgnisklvyfce
mspeqlqkvgpyieakaqknlskkrlvyvstciiiireliigcrkhlalfsgnatrlmki
lliqteypslqieatetfirfasvqddsnqippeidefikyfiimaknmdnddtmrrtir
geglrgvtayvslasltddldtfitkpyryhlynfr*y---

---tnysi****wcfgifk*lfktny*nnn*wike*k*str*yyinf*nlgsiin*rke*
tnsifnsnvikt*irn*******svtn*tc*insfidfilfncsckii*ikrvgrlc*ts
fkls*ineysl*ifii*ykefkwfsnckhsktylf*srsryfntc*wffffflnyncyn*
nynsnyscnfnnn*rnyyysrnf*kkkkkkkkkkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSI232 (SSI232Q) /CSM/SS/SSI2-B/SSI232Q.Seq.d/ 2329 0.0
VHC861 (VHC861Q) /CSM/VH/VHC8-C/VHC861Q.Seq.d/ 924 0.0
AHM717 (AHM717Q) /CSM/AH/AHM7-A/AHM717Q.Seq.d/ 916 0.0
SHK716 (SHK716Q) /CSM/SH/SHK7-A/SHK716Q.Seq.d/ 912 0.0
VHA477 (VHA477Q) /CSM/VH/VHA4-D/VHA477Q.Seq.d/ 894 0.0
VHI708 (VHI708Q) /CSM/VH/VHI7-A/VHI708Q.Seq.d/ 394 e-108
SSH717 (SSH717Q) /CSM/SS/SSH7-A/SSH717Q.Seq.d/ 44 0.005
SSE138 (SSE138Q) /CSM/SS/SSE1-B/SSE138Q.Seq.d/ 44 0.005
CHP719 (CHP719Q) /CSM/CH/CHP7-A/CHP719Q.Seq.d/ 44 0.005
CHF805 (CHF805Q) /CSM/CH/CHF8-A/CHF805Q.Seq.d/ 44 0.005

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 36 2e-06 9
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 36 4e-06 10
AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 38 6e-06 7
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 38 2e-05 10
AE014818|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence. 38 3e-05 11
AF079445|AF079445.1 Dictyostelium discoideum TipC (tipC) gene, complete cds. 38 5e-05 6
AC005507|AC005507.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 36 1e-04 10
AL844505|AL844505.1 Plasmodium falciparum chromosome 6. 40 3e-04 9
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 40 3e-04 9
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 36 4e-04 8
dna update 2003. 7.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BX324115_7(BX324115|pid:none) Zebrafish DNA sequence from clone ... 80 2e-13
(Q5SPP5) RecName: Full=Protein EFR3 homolog B; &AL845420_1(AL84... 80 2e-13
AB023170_1(AB023170|pid:none) Homo sapiens mRNA for KIAA0953 pro... 78 6e-13
(Q6ZQ18) RecName: Full=Protein EFR3 homolog B; &BC147643_1(BC14... 78 6e-13
(Q9Y2G0) RecName: Full=Protein EFR3 homolog B; 78 6e-13
BC060906_1(BC060906|pid:none) Danio rerio EFR3 homolog A (S. cer... 77 2e-12
BC007482_1(BC007482|pid:none) Mus musculus EFR3 homolog A (S. ce... 77 2e-12
AK129065_1(AK129065|pid:none) Mus musculus mRNA for mKIAA0143 pr... 77 2e-12
AK030074_1(AK030074|pid:none) Mus musculus adult male testis cDN... 77 2e-12
D63477_1(D63477|pid:none) Homo sapiens mRNA for KIAA0143 gene, p... 76 3e-12
protein update 2009. 6.13
PSORT

psg: 0.75 gvh: 0.33 alm: 0.31 top: 0.30 tms: 0.07 mit: 0.19 mip: 0.00
nuc: 0.36 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.14 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

36.0 %: mitochondrial
24.0 %: nuclear
12.0 %: Golgi
12.0 %: endoplasmic reticulum
8.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for SSI232 is mit

5' end seq. ID SSI232F
5' end seq.
>SSI232F.Seq
ATTTATTTATTTATTTATTTTCTTTTTTTGTAATATTATTTTAATAATATTAATAGTAAT
ACTAAAAGATGGCATTTGGTAAAACGAAAAAATATAAGAGAATTGTTAAAACGATTTTCC
CTCAAGTTGAAGGTGGTGAAATGCAATTAGGTAATATTAGTAAATTAGTTTATTTTTGCG
AAATGAGTCCAGAGCAACTTCAAAAGGTTGGACCTTATATAGAGGCAAAAGCACAAAAGA
ATTTATCAAAAAAAAGGTTAGTTTATGTTTCAACTTGTATCATTATCATTAGAGAACTTA
TCATTGGTTGTAGAAAACATTTAGCATTATTCTCTGGTAATGCTACAAGATTAATGAAAA
TATTATTAATTCAAACTGAATATCCATCATTACAAATTGAAGCAACTGAAACCTTTATTA
GATTTGCATCAGTTCAAGATGATTCAAATCAAATACCACCAGAAATTGATGAATTTATAA
AGTATTTTATTATAATGGCAAAGAATATGGATAATGATGATACAATGAGAAGAACTATTA
GAGGTGAAGGTTTAAGAGGTGTAACGGCATATGTTTCATTAGCAAGTTTAACTGACGATT
TAGATACTTTTATTACAAAACCATACAGATATCATTTATACAATTTTAGATAATATGC--
--------
Length of 5' end seq. 658
3' end seq. ID SSI232Z
3' end seq.
>SSI232Z.Seq
----------TCACAAATTATTCAATTTAATAATAATGATGGTGTTTTGGAATTTTTAAA
TAATTGTTCAAAACCAATTATTGAAACAATAATTAGTGGATTAAAGAGTAAAAATAATCA
ACCAGATAATATTATATCAATTTTTAAAACCTTGGTAGCATTATTAATTAGAGAAAAGAG
TAAACAAATTCAATATTCAATTCCAATGTTATTAAAACTTGAATCAGAAATTGATGATAA
TAATAATAGTAATCAGTTACCAATTAGACTTGTTAGATCAATTCATTTATTGATTTCATC
TTATTTAATTGTAGTTGCAAGATTATATAGATCAAAAGAGTTGGAAGATTATGTTGAACA
AGTTTCAAATTATCGTAAATCAATGAATATTCATTGTAAATATTTATTATTTGATATAAA
GAGTTTAAGTGGTTTAGTAATTGCAAACACTCAAAAACATATTTATTCTGATCAAGATCA
AGATATTTCAACACTTGTTAGTGGTTCTTCTTCTTCTTCCTCAACTACAATTGCTACAAC
TAAAATTACAACTCAAACTACTCTTGTAACTTCAACAACAATTGAAGAAACTATTACTAC
TCAAGAAACTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 643
Connected seq. ID SSI232P
Connected seq.
>SSI232P.Seq
ATTTATTTATTTATTTATTTTCTTTTTTTGTAATATTATTTTAATAATATTAATAGTAAT
ACTAAAAGATGGCATTTGGTAAAACGAAAAAATATAAGAGAATTGTTAAAACGATTTTCC
CTCAAGTTGAAGGTGGTGAAATGCAATTAGGTAATATTAGTAAATTAGTTTATTTTTGCG
AAATGAGTCCAGAGCAACTTCAAAAGGTTGGACCTTATATAGAGGCAAAAGCACAAAAGA
ATTTATCAAAAAAAAGGTTAGTTTATGTTTCAACTTGTATCATTATCATTAGAGAACTTA
TCATTGGTTGTAGAAAACATTTAGCATTATTCTCTGGTAATGCTACAAGATTAATGAAAA
TATTATTAATTCAAACTGAATATCCATCATTACAAATTGAAGCAACTGAAACCTTTATTA
GATTTGCATCAGTTCAAGATGATTCAAATCAAATACCACCAGAAATTGATGAATTTATAA
AGTATTTTATTATAATGGCAAAGAATATGGATAATGATGATACAATGAGAAGAACTATTA
GAGGTGAAGGTTTAAGAGGTGTAACGGCATATGTTTCATTAGCAAGTTTAACTGACGATT
TAGATACTTTTATTACAAAACCATACAGATATCATTTATACAATTTTAGATAATATGC--
--------TCACAAATTATTCAATTTAATAATAATGATGGTGTTTTGGAATTTTTAAATA
ATTGTTCAAAACCAATTATTGAAACAATAATTAGTGGATTAAAGAGTAAAAATAATCAAC
CAGATAATATTATATCAATTTTTAAAACCTTGGTAGCATTATTAATTAGAGAAAAGAGTA
AACAAATTCAATATTCAATTCCAATGTTATTAAAACTTGAATCAGAAATTGATGATAATA
ATAATAGTAATCAGTTACCAATTAGACTTGTTAGATCAATTCATTTATTGATTTCATCTT
ATTTAATTGTAGTTGCAAGATTATATAGATCAAAAGAGTTGGAAGATTATGTTGAACAAG
TTTCAAATTATCGTAAATCAATGAATATTCATTGTAAATATTTATTATTTGATATAAAGA
GTTTAAGTGGTTTAGTAATTGCAAACACTCAAAAACATATTTATTCTGATCAAGATCAAG
ATATTTCAACACTTGTTAGTGGTTCTTCTTCTTCTTCCTCAACTACAATTGCTACAACTA
AAATTACAACTCAAACTACTCTTGTAACTTCAACAACAATTGAAGAAACTATTACTACTC
AAGAAACTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 1301
Full length Seq ID -
Full length Seq. -
Length of full length seq. -