SSI230
Library SS
(Link to library)
Clone ID SSI230
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11777-1
Original site URL
Representative seq. ID SSI230E
(Link to Original site)
Representative DNA sequence
>SSI230 (SSI230Q) /CSM/SS/SSI2-B/SSI230Q.Seq.d/
TAAAAAAATAAAAAAATAAAAAAAAAAAAAATAAAAAAAAAAAAAAAATAAATAAATAAA
TAAATAAATAAATAAAGAAAATAAAAATAAAAAAATGGAATTATTAAAAACATTAAGGGC
ATCCTCACCAGTTTTTCCAAATGACTCAAGTGTAATAAAAGCAGTATCAATGACAGATAC
AATAGATCTTGCATTAAAACAATTAATTTCAAATAATATTTTATCTGCTCCTGTTTATAA
CCCAAATGAAAAGAAATATTATTGTTTCTTTTCAATGTTAGATTTAATTAAAGAGATTGT
TACAACATCAACAACTCAACATTGGGAACAAGAAGGTGATATCAATACTGTTTTATTGGA
TCTTCAAGATAGAAAATTATTTAAAAAAAGTATAGTGGCTGATATTTGTGATTCATCAAA
AAGAGATCCTTTCATTGTAGTCGATAGTGAAACTATGTTGGATAATGTCGCTGGTTTAAT
GGTTAAAAATAATATTAGAAGAGTTGCCGTATTAAATCAAAAAGGTGAACTTTGTAATAT
AATTACAAATTCAAGAATTATTGAATGTATATCTCATTTATTTGCAATGGATAAAGAATT
AGAAAAATTAGGTAAAATGACAATTAAAGAGATGAAAATTGGTACAAGTGATGTAGTTTC
AATTTCAAGCGATAAAAAAGCATGGGATGCATTCAAATTAATTTCAAAAATGGGTGTTAG
TGGTGTTGGTGTTACAGATTCACAAGGTAAATTAATTGGCGCTATTGGTGATAGTGATTT
AAAGTTAATTAAACCAAAATTCCAATACCTTCAATTATTACATTTACCTGTATCTGAATA
TTTACAAGCTTTAAAAAAAGTCACTGATAATAATTATATTTTTTGTAAACCAAGTGATAC
ATTTAAAAGTGTTGTTGAAAATGTTTCTGAAAAAAAAGCACATAGAGTATTTGTTGTAAA
TGATGATCATCATCCAATTGGTGTTGTTTCTTTACAAGATATTTTAGAACAAATCGTTAT
TCATCATAAAAAATAAATAAAATTAAAATAAAAAATAAAAATTGTTTAGAA
sequence update 1999. 6.11
Translated Amino Acid sequence
kkikk*kkkk*kkkknk*ink*INKENKNKKMELLKTLRASSPVFPNDSSVIKAVSMTDT
IDLALKQLISNNILSAPVYNPNEKKYYCFFSMLDLIKEIVTTSTTQHWEQEGDINTVLLD
LQDRKLFKKSIVADICDSSKRDPFIVVDSETMLDNVAGLMVKNNIRRVAVLNQKGELCNI
ITNSRIIECISHLFAMDKELEKLGKMTIKEMKIGTSDVVSISSDKKAWDAFKLISKMGVS
GVGVTDSQGKLIGAIGDSDLKLIKPKFQYLQLLHLPVSEYLQALKKVTDNNYIFCKPSDT
FKSVVENVSEKKAHRVFVVNDDHHPIGVVSLQDILEQIVIHHKK*iklk*kikiv*


Translated Amino Acid sequence (All Frames)
Frame A:
*knkkikkkkikkkkk*ink*ink*rk*k*kngiiknikgiltsfsk*lkcnkssindry
nrsciktinfk*yficscl*pk*keillflfnvrfn*rdcyninnstlgtrr*yqycfig
ssr*kii*kkysg*yl*fikkrsfhcsr**nyvg*crwfng*k*y*kscrikskr*tl*y
nykfkny*myisficng*rirkir*ndn*rdenwyk*csfnfkr*ksmgciqinfkngc*
wcwcyrftr*inwryw***fkvn*tkipipsiitftci*iftsfkksh***lyfl*tk*y
i*kcc*kcf*kkst*sicck**sssnwccfftryfrtnryss*kinkikiknkncle


Frame B:
kkikk*kkkk*kkkknk*ink*INKENKNKKMELLKTLRASSPVFPNDSSVIKAVSMTDT
IDLALKQLISNNILSAPVYNPNEKKYYCFFSMLDLIKEIVTTSTTQHWEQEGDINTVLLD
LQDRKLFKKSIVADICDSSKRDPFIVVDSETMLDNVAGLMVKNNIRRVAVLNQKGELCNI
ITNSRIIECISHLFAMDKELEKLGKMTIKEMKIGTSDVVSISSDKKAWDAFKLISKMGVS
GVGVTDSQGKLIGAIGDSDLKLIKPKFQYLQLLHLPVSEYLQALKKVTDNNYIFCKPSDT
FKSVVENVSEKKAHRVFVVNDDHHPIGVVSLQDILEQIVIHHKK*iklk*kikiv*


Frame C:
kk*knkkkknkkkkkink*ink*ikkikikkwny*kh*ghphqffqmtqv**kqyq*qiq
*ilh*nn*fqiifylllfitqmkrniivsfqc*i*lkrllqhqqlnignkkvisilfywi
fkienylkkv*wlifvihqkeilsl*sivklcwimslv*wlkiileelpy*ikkvnfvi*
lqiqellnvyliylqwikn*kn*vk*qlkr*klvqvm*fqfqaikkhgmhsn*fqkwvlv
vlvlqihkvn*lallvivi*s*lnqnsntfnyyiylylniykl*kksliiiiffvnqvih
lkvllkmflkkkhieyll*mmiiiqlvlflykif*nkslfiiknk*n*nkk*klfr


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSI230 (SSI230Q) /CSM/SS/SSI2-B/SSI230Q.Seq.d/ 1683 0.0
CHI345 (CHI345Q) /CSM/CH/CHI3-B/CHI345Q.Seq.d/ 1310 0.0
SSE758 (SSE758Q) /CSM/SS/SSE7-C/SSE758Q.Seq.d/ 1172 0.0
VSD316 (VSD316Q) /CSM/VS/VSD3-A/VSD316Q.Seq.d/ 1033 0.0
VSC824 (VSC824Q) /CSM/VS/VSC8-A/VSC824Q.Seq.d/ 793 0.0
SLH581 (SLH581Q) /CSM/SL/SLH5-D/SLH581Q.Seq.d/ 696 0.0
SSE430 (SSE430Q) /CSM/SS/SSE4-B/SSE430Q.Seq.d/ 666 0.0
VSE840 (VSE840Q) /CSM/VS/VSE8-B/VSE840Q.Seq.d/ 589 e-167
SLI691 (SLI691Q) /CSM/SL/SLI6-D/SLI691Q.Seq.d/ 276 7e-73
VSD423 (VSD423Q) /CSM/VS/VSD4-A/VSD423Q.Seq.d/ 48 3e-04

own update 2002.12.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 42 0.006 8
AZ682240|AZ682240.1 ENTLN70TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 42 0.017 3
AZ690387|AZ690387.1 ENTLF44TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 42 0.019 3
BH164598|BH164598.1 ENTRB54TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 42 0.019 3
AZ543013|AZ543013.1 ENTEE72TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 42 0.020 3
BH152712|BH152712.1 ENTPT82TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 42 0.020 3
BH150526|BH150526.1 ENTPV04TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 42 0.020 3
AV957392|AV957392.1 Ciona intestinalis cDNA, clone:cieg14k24, 5' end, single read. 40 0.032 3
AV676018|AV676018.1 Ciona intestinalis cDNA clone:citb9j24 : 5' end, single read. 40 0.032 3
BW220500|BW220500.1 Ciona intestinalis cDNA, clone:cieg099j17, 5' end, single read. 40 0.032 3
dna update 2003. 7.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC121620_1(BC121620|pid:none) Xenopus tropicalis AMP-activated p... 86 2e-15
BC043738_1(BC043738|pid:none) Xenopus laevis protein kinase, AMP... 85 5e-15
BC170164_1(BC170164|pid:none) Xenopus laevis hypothetical protei... 84 6e-15
BC155923_1(BC155923|pid:none) Xenopus laevis hypothetical protei... 84 6e-15
AL132904_8(AL132904|pid:none) Caenorhabditis elegans YAC Y111B2A... 83 2e-14
(Q10343) RecName: Full=Uncharacterized protein C1556.08c; &CU32... 81 7e-14
AP003707_7(AP003707|pid:none) Oryza sativa Japonica Group genomi... 79 2e-13
BT041658_1(BT041658|pid:none) Zea mays full-length cDNA clone ZM... 79 4e-13
AM426713_6(AM426713|pid:none) Vitis vinifera contig VV78X080187.... 79 4e-13
CP001326_282(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 78 6e-13
protein update 2009. 7. 8
PSORT

psg: 0.66 gvh: 0.54 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for SSI230 is nuc

5' end seq. ID SSI230F
5' end seq.
>SSI230F.Seq
TAAAAAAATAAAAAAATAAAAAAAAAAAAAATAAAAAAAAAAAAAAAATAAATAAATAAA
TAAATAAATAAATAAAGAAAATAAAAATAAAAAAATGGAATTATTAAAAACATTAAGGGC
ATCCTCACCAGTTTTTCCAAATGACTCAAGTGTAATAAAAGCAGTATCAATGACAGATAC
AATAGATCTTGCATTAAAACAATTAATTTCAAATAATATTTTATCTGCTCCTGTTTATAA
CCCAAATGAAAAGAAATATTATTGTTTCTTTTCAATGTTAGATTTAATTAAAGAGATTGT
TACAACATCAACAACTCAACATTGGGAACAAGAAGGTGATATCAATACTGTTTTATTGGA
TCTTCAAGATAGAAAATTATTTAAAAAAAGTATAGTGGCTGATATTTGTGATTCATCAAA
AAGAGATCCTTTCATTGTAGTCGATAGTGAAACTATGTTGGATAATGTCGCTGGTTTAAT
GGTTAAAAATAATATTAGAAGAGTTGCCGTATTAAATCAAA----------
Length of 5' end seq. 521
3' end seq. ID SSI230Z
3' end seq.
>SSI230Z.Seq
----------ATAATATTAGAAGAGTTGCCGTATTAAATCAAAAAGGTGAACTTTGTAAT
ATAATTACAAATTCAAGAATTATTGAATGTATATCTCATTTATTTGCAATGGATAAAGAA
TTAGAAAAATTAGGTAAAATGACAATTAAAGAGATGAAAATTGGTACAAGTGATGTAGTT
TCAATTTCAAGCGATAAAAAAGCATGGGATGCATTCAAATTAATTTCAAAAATGGGTGTT
AGTGGTGTTGGTGTTACAGATTCACAAGGTAAATTAATTGGCGCTATTGGTGATAGTGAT
TTAAAGTTAATTAAACCAAAATTCCAATACCTTCAATTATTACATTTACCTGTATCTGAA
TATTTACAAGCTTTAAAAAAAGTCACTGATAATAATTATATTTTTTGTAAACCAAGTGAT
ACATTTAAAAGTGTTGTTGAAAATGTTTCTGAAAAAAAAGCACATAGAGTATTTGTTGTA
AATGATGATCATCATCCAATTGGTGTTGTTTCTTTACAAGATATTTTAGAACAAATCGTT
ATTCATCATAAAAAATAAATAAAATTAAAATAAAAAATAAAAATTGTTTAGAA
Length of 3' end seq. 583
Connected seq. ID SSI230P
Connected seq.
>SSI230P.Seq
TAAAAAAATAAAAAAATAAAAAAAAAAAAAATAAAAAAAAAAAAAAAATAAATAAATAAA
TAAATAAATAAATAAAGAAAATAAAAATAAAAAAATGGAATTATTAAAAACATTAAGGGC
ATCCTCACCAGTTTTTCCAAATGACTCAAGTGTAATAAAAGCAGTATCAATGACAGATAC
AATAGATCTTGCATTAAAACAATTAATTTCAAATAATATTTTATCTGCTCCTGTTTATAA
CCCAAATGAAAAGAAATATTATTGTTTCTTTTCAATGTTAGATTTAATTAAAGAGATTGT
TACAACATCAACAACTCAACATTGGGAACAAGAAGGTGATATCAATACTGTTTTATTGGA
TCTTCAAGATAGAAAATTATTTAAAAAAAGTATAGTGGCTGATATTTGTGATTCATCAAA
AAGAGATCCTTTCATTGTAGTCGATAGTGAAACTATGTTGGATAATGTCGCTGGTTTAAT
GGTTAAAAATAATATTAGAAGAGTTGCCGTATTAAATCAAA----------ATAATATTA
GAAGAGTTGCCGTATTAAATCAAAAAGGTGAACTTTGTAATATAATTACAAATTCAAGAA
TTATTGAATGTATATCTCATTTATTTGCAATGGATAAAGAATTAGAAAAATTAGGTAAAA
TGACAATTAAAGAGATGAAAATTGGTACAAGTGATGTAGTTTCAATTTCAAGCGATAAAA
AAGCATGGGATGCATTCAAATTAATTTCAAAAATGGGTGTTAGTGGTGTTGGTGTTACAG
ATTCACAAGGTAAATTAATTGGCGCTATTGGTGATAGTGATTTAAAGTTAATTAAACCAA
AATTCCAATACCTTCAATTATTACATTTACCTGTATCTGAATATTTACAAGCTTTAAAAA
AAGTCACTGATAATAATTATATTTTTTGTAAACCAAGTGATACATTTAAAAGTGTTGTTG
AAAATGTTTCTGAAAAAAAAGCACATAGAGTATTTGTTGTAAATGATGATCATCATCCAA
TTGGTGTTGTTTCTTTACAAGATATTTTAGAACAAATCGTTATTCATCATAAAAAATAAA
TAAAATTAAAATAAAAAATAAAAATTGTTTAGAA
Length of connected seq. 1104
Full length Seq ID SSI230E
Full length Seq.
>SSI230E.Seq
TAAAAAAATAAAAAAATAAAAAAAAAAAAAATAAAAAAAAAAAAAAAATAAATAAATAAA
TAAATAAATAAATAAAGAAAATAAAAATAAAAAAATGGAATTATTAAAAACATTAAGGGC
ATCCTCACCAGTTTTTCCAAATGACTCAAGTGTAATAAAAGCAGTATCAATGACAGATAC
AATAGATCTTGCATTAAAACAATTAATTTCAAATAATATTTTATCTGCTCCTGTTTATAA
CCCAAATGAAAAGAAATATTATTGTTTCTTTTCAATGTTAGATTTAATTAAAGAGATTGT
TACAACATCAACAACTCAACATTGGGAACAAGAAGGTGATATCAATACTGTTTTATTGGA
TCTTCAAGATAGAAAATTATTTAAAAAAAGTATAGTGGCTGATATTTGTGATTCATCAAA
AAGAGATCCTTTCATTGTAGTCGATAGTGAAACTATGTTGGATAATGTCGCTGGTTTAAT
GGTTAAAAATAATATTAGAAGAGTTGCCGTATTAAATCAAAAAGGTGAACTTTGTAATAT
AATTACAAATTCAAGAATTATTGAATGTATATCTCATTTATTTGCAATGGATAAAGAATT
AGAAAAATTAGGTAAAATGACAATTAAAGAGATGAAAATTGGTACAAGTGATGTAGTTTC
AATTTCAAGCGATAAAAAAGCATGGGATGCATTCAAATTAATTTCAAAAATGGGTGTTAG
TGGTGTTGGTGTTACAGATTCACAAGGTAAATTAATTGGCGCTATTGGTGATAGTGATTT
AAAGTTAATTAAACCAAAATTCCAATACCTTCAATTATTACATTTACCTGTATCTGAATA
TTTACAAGCTTTAAAAAAAGTCACTGATAATAATTATATTTTTTGTAAACCAAGTGATAC
ATTTAAAAGTGTTGTTGAAAATGTTTCTGAAAAAAAAGCACATAGAGTATTTGTTGTAAA
TGATGATCATCATCCAATTGGTGTTGTTTCTTTACAAGATATTTTAGAACAAATCGTTAT
TCATCATAAAAAATAAATAAAATTAAAATAAAAAATAAAAATTGTTTAGAA
Length of full length seq. 1071