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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI228
Library SS
(Link to library)
Clone ID SSI228
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16448-1
Original site URL
Representative seq. ID SSI228Z
(Link to Original site)
Representative DNA sequence 
>SSI228 (SSI228Q) /CSM/SS/SSI2-B/SSI228Q.Seq.d/
XXXXXXXXXXAAAATTAATTCTTCACCTTCAAAATTCACTCCAAATGGTAATCAAATTTG
TCTTGGTCAAGTTTCAACAATTTCAACAATTGGTAGTTCAACTACAACTGCTTCACAATC
AACAACAACAACAACAACTGGAACAGGTTCAACAACTAGTAAACCAACAACCACTGGTGG
ATCAGGTTCATCAACAACTACAACTAAACCATCAACAACAACAACAACAACAACAACAAC
CACTGGTGGATCAAGTACAACTGGATCATCAAATGTTAAAGCAGTTATTAAACAAACTAT
TAGACAAACTTGGTTTGATGGTACAAATACAAATACTTTGGTTGATTGTACATTAACCAA
TCCATCAAGTAGTCCAATTCCTATTCCAAGATTTGCAATTGATAAAACTCCATCATCATC
TTGGGAATTGAATTTAGTTAGTTCAAATATTGTTTCATTTACAAGTTGGAATAACCAAAT
TAGTCCTGGTCAAACTTTATCATTTGGTTATATTGTTTCTAGTAGTACTGTAATTACATT
TACTCAAATTTA
sequence update 1997.12.31
Translated Amino Acid sequence 
---INSSPSKFTPNGNQICLGQVSTISTIGSSTTTASQSTTTTTTGTGSTTSKPTTTGGS
GSSTTTTKPSTTTTTTTTTTGGSSTTGSSNVKAVIKQTIRQTWFDGTNTNTLVDCTLTNP
SSSPIPIPRFAIDKTPSSSWELNLVSSNIVSFTSWNNQISPGQTLSFGYIVSSSTVITFT
QI
Translated Amino Acid sequence (All Frames) 
Frame A:
---klilhlqnslqmvikfvlvkfqqfqqlvvqlqllhnqqqqqqleqvqqlvnqqplvd
qvhqqlqlnhqqqqqqqqqplvdqvqldhqmlkqllnklldklglmvqiqilwlivh*pi
hqvvqflfqdlqliklhhhlgn*i*lvqilfhlqvgitklvlvklyhlvilflvvl*lhl
lkf


Frame B:
---n*fftfkihskw*snlswssfnnfnnw*fnyncftinnnnnnwnrfnn**tnnhwwi
rfinnyn*tinnnnnnnnnhwwikynwiikc*ssy*tny*tnlv*wykykyfg*lyinqs
ik*snsyskicn**nsiiilgiefs*fkycfiykle*pn*swsnfiiwlycf**ycnyiy
snl


Frame C:
---INSSPSKFTPNGNQICLGQVSTISTIGSSTTTASQSTTTTTTGTGSTTSKPTTTGGS
GSSTTTTKPSTTTTTTTTTTGGSSTTGSSNVKAVIKQTIRQTWFDGTNTNTLVDCTLTNP
SSSPIPIPRFAIDKTPSSSWELNLVSSNIVSFTSWNNQISPGQTLSFGYIVSSSTVITFT
QI
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM763 (SSM763Q) /CSM/SS/SSM7-C/SSM763Q.Seq.d/                        618   e-176
SSK593 (SSK593Q) /CSM/SS/SSK5-D/SSK593Q.Seq.d/                        618   e-176
SSI526 (SSI526Q) /CSM/SS/SSI5-B/SSI526Q.Seq.d/                        618   e-176
SSI228 (SSI228Q) /CSM/SS/SSI2-B/SSI228Q.Seq.d/                        618   e-176
SSI120 (SSI120Q) /CSM/SS/SSI1-A/SSI120Q.Seq.d/                        618   e-176
SSH762 (SSH762Q) /CSM/SS/SSH7-C/SSH762Q.Seq.d/                        618   e-176
SSG285 (SSG285Q) /CSM/SS/SSG2-D/SSG285Q.Seq.d/                        618   e-176
SSG235 (SSG235Q) /CSM/SS/SSG2-B/SSG235Q.Seq.d/                        618   e-176
SSG191 (SSG191Q) /CSM/SS/SSG1-D/SSG191Q.Seq.d/                        618   e-176
SSF613 (SSF613Q) /CSM/SS/SSF6-A/SSF613Q.Seq.d/                        618   e-176
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M18162|M18162.1 Pea PSL3 lectin pseudogene.                       44  0.027  2
AC132086|AC132086.2 Mus musculus chromosome UNK clone RP24-556M16, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38  2.4  3
AF196362|AF196362.1 Uroleucon ambrosiae isolate IL2.17 cytochrome oxidase I subunit-like gene, partial sequence; tRNA-Leu gene, complete sequence; and cytochrome oxidase subunit II gene, partial cds; mitochondrial genes for mitochondrial products.    36  2.5  2
AF196366|AF196366.1 Uroleucon ambrosiae isolate LA.013 cytochrome oxidase subunit I gene, partial cds; tRNA-Leu gene, complete sequence; and cytochrome oxidase subunit II gene, partial cds; mitochondrial genes for mitochondrial products.    36  2.5  2
AF196356|AF196356.1 Uroleucon ambrosiae isolate AZ.065 cytochrome oxidase subunit I gene, partial cds; tRNA-Leu gene, complete sequence; and cytochrome oxidase subunit II gene, partial cds; mitochondrial genes for mitochondrial products.    36  2.5  2
AF196355|AF196355.1 Uroleucon ambrosiae isolate AZ.026 cytochrome oxidase subunit I gene, partial cds; tRNA-Leu gene, complete sequence; and cytochrome oxidase subunit II gene, partial cds; mitochondrial genes for mitochondrial products.    36  2.5  2
AF196354|AF196354.1 Uroleucon ambrosiae isolate AZ.023 cytochrome oxidase subunit I gene, partial cds; tRNA-Leu gene, complete sequence; and cytochrome oxidase subunit II gene, partial cds; mitochondrial genes for mitochondrial products.    36  2.5  2
AF196376|AF196376.1 Uroleucon ambrosiae isolate VA.015 cytochrome oxidase I subunit-like gene, partial sequence; tRNA-Leu gene, complete sequence; and cytochrome oxidase subunit II gene, partial cds; mitochondrial genes for mitochondrial products.    36  2.5  2
AF196372|AF196372.1 Uroleucon ambrosiae isolate OH.036 cytochrome oxidase subunit I gene, partial cds; tRNA-Leu gene, complete sequence; and cytochrome oxidase II subunit-like gene, partial sequence; mitochondrial genes for mitochondrial products.    36  2.5  2
AF196367|AF196367.1 Uroleucon ambrosiae isolate MI.035 cytochrome oxidase subunit I gene, partial cds; tRNA-Leu gene, complete sequence; and cytochrome oxidase II subunit-like gene, partial sequence; mitochondrial genes for mitochondrial products.    36  2.5  2
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116977_84(AC116977|pid:none) Dictyostelium discoideum chromoso...    50   4e-05
(P14768) RecName: Full=Endo-1,4-beta-xylanase A;          Short=...    43   0.005
(P22698) RecName: Full=Spore germination protein 270-11;  &B3562...    41   0.023
CP000934_2552(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    38   0.15
CP000282_2268(CP000282|pid:none) Saccharophagus degradans 2-40, ...    38   0.15
AB110082_1(AB110082|pid:none) Bacillus ehimensis gene for chitin...    38   0.20
CP000934_3210(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    37   0.34
T18270(T18270) hypothetical protein - slime mold (Dictyostelium ...    37   0.44
AF054615_1(AF054615|pid:none) Fragaria x ananassa cellulase (Cel...    36   0.57
CP000282_2307(CP000282|pid:none) Saccharophagus degradans 2-40, ...    36   0.57
protein update 2009. 2. 1
PSORT 

 psg: 0.89  gvh: 0.50  alm: 0.43  top: 0.47  tms: 0.00  mit: 0.81  mip: 0.16
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  8.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSI228 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI228Z
3' end seq. 
>SSI228Z.Seq
----------AAAATTAATTCTTCACCTTCAAAATTCACTCCAAATGGTAATCAAATTTG
TCTTGGTCAAGTTTCAACAATTTCAACAATTGGTAGTTCAACTACAACTGCTTCACAATC
AACAACAACAACAACAACTGGAACAGGTTCAACAACTAGTAAACCAACAACCACTGGTGG
ATCAGGTTCATCAACAACTACAACTAAACCATCAACAACAACAACAACAACAACAACAAC
CACTGGTGGATCAAGTACAACTGGATCATCAAATGTTAAAGCAGTTATTAAACAAACTAT
TAGACAAACTTGGTTTGATGGTACAAATACAAATACTTTGGTTGATTGTACATTAACCAA
TCCATCAAGTAGTCCAATTCCTATTCCAAGATTTGCAATTGATAAAACTCCATCATCATC
TTGGGAATTGAATTTAGTTAGTTCAAATATTGTTTCATTTACAAGTTGGAATAACCAAAT
TAGTCCTGGTCAAACTTTATCATTTGGTTATATTGTTTCTAGTAGTACTGTAATTACATT
TACTCAAATTTA
Length of 3' end seq. 542
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -