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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI225
Library SS
(Link to library)
Clone ID SSI225
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12571-1
Original site URL
Representative seq. ID SSI225E
(Link to Original site)
Representative DNA sequence 
>SSI225 (SSI225Q) /CSM/SS/SSI2-B/SSI225Q.Seq.d/
CTTTAAATTTTTCTAACAATAATTTACCTTTTTAAAATAATTTAGTAAAAAAAAATTAAA
AAAAAAAATAAAAAACACATTAAACAATTTTTTTTTTTTTAAGGATTTCCATATCTTTCA
CATTTAATTTTTTTTATTATTTATTGGAAATCCTTCCTCGTTATTAAAACCTTATTAAAA
ATTAAATTAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AAAATAAAATAAAATAAAATAATAAAAATAATATTAGAAAAAAAAAATAAGAA
sequence update 1997.12.31
Translated Amino Acid sequence 
l*ifltiiylfkii**kkikkknkkhikqffff*GFPYLSHLIFFIIYWKSFLVIKTLLK
IKLNNNNNNNNNNNNNNNNNKIK*nkiikiilekknk
Translated Amino Acid sequence (All Frames) 
Frame A:
l*ifltiiylfkii**kkikkknkkhikqffff*GFPYLSHLIFFIIYWKSFLVIKTLLK
IKLNNNNNNNNNNNNNNNNNKIK*nkiikiilekknk


Frame B:
fkff*q*ftflk*fskkklkkkikntlnnffffkdfhifhi*ffllfignpssllkpy*k
ln*iiiiiiiiiiiiiiiiik*nkik**k*y*kkkir


Frame C:
lnfsnnnlpf*nnlvkkn*kkk*kth*tiffflrisisftfnffyylleilpry*nlikn
*ik*****************nkik*nnknnirkkk*e
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI225 (SSI225Q) /CSM/SS/SSI2-B/SSI225Q.Seq.d/                        115   4e-25
VSD258 (VSD258Q) /CSM/VS/VSD2-C/VSD258Q.Seq.d/                         58   8e-08
VFF892 (VFF892Q) /CSM/VF/VFF8-D/VFF892Q.Seq.d/                         36   0.28
SSE178 (SSE178Q) /CSM/SS/SSE1-D/SSE178Q.Seq.d/                         34   1.1
VSJ826 (VSJ826Q) /CSM/VS/VSJ8-B/VSJ826Q.Seq.d/                         32   4.4
VSE467 (VSE467Q) /CSM/VS/VSE4-C/VSE467Q.Seq.d/                         32   4.4
VHK480 (VHK480Q) /CSM/VH/VHK4-D/VHK480Q.Seq.d/                         32   4.4
VFK752 (VFK752Q) /CSM/VF/VFK7-C/VFK752Q.Seq.d/                         32   4.4
VFH582 (VFH582Q) /CSM/VF/VFH5-D/VFH582Q.Seq.d/                         32   4.4
VFF270 (VFF270Q) /CSM/VF/VFF2-C/VFF270Q.Seq.d/                         32   4.4
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    94  5e-16  7
AY027718|AY027718.1 Gastrophysa cyanea 12S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.    42  0.27  2
AF077409|AF077409.1 Arabidopsis thaliana BAC T24M8.               44  0.27  3
AP002067|AP002067.2 Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T7B9.    44  0.91  1
AC096825|AC096825.5 Rattus norvegicus clone CH230-104H15, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44  0.91  1
BH549870|BH549870.1 BOHBY88TR BOHB Brassica oleracea genomic clone BOHBY88, DNA sequence.    44  0.91  1
AL089408|AL089408.1 Arabidopsis thaliana genome survey sequence T7 end of BAC T3N15 of  TAMU library from strain Columbia of Arabidopsis thaliana.    44  0.91  1
AE012553|AE012553.1 Xylella fastidiosa Temecula1,  section 1 of 9 of the complete genome.    44  0.91  1
B19950|B19950.1 T3N15-T7 TAMU Arabidopsis thaliana genomic clone T3N15, genomic survey sequence.    44  0.91  1
BH497248|BH497248.1 BOHTT06TF BOHT Brassica oleracea genomic clone BOHTT06, DNA sequence.    44  0.91  1
dna update 2003. 7.29
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 122,118,536
protein update 2009. 7. 8
PSORT 

 psg: 0.97  gvh: 0.34  alm: 0.32  top: 0.70  tms: 0.07  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.11  leu: 0.11  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SSI225 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSI225E
Full length Seq. 
>SSI225E.Seq
CTTTAAATTTTTCTAACAATAATTTACCTTTTTAAAATAATTTAGTAAAAAAAAATTAAA
AAAAAAAATAAAAAACACATTAAACAATTTTTTTTTTTTTAAGGATTTCCATATCTTTCA
CATTTAATTTTTTTTATTATTTATTGGAAATCCTTCCTCGTTATTAAAACCTTATTAAAA
ATTAAATTAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AAAATAAAATAAAATAAAATAATAAAAATAATATTAGAAAAAAAAAATAAGAA
Length of full length seq. 293