>SSI217 (SSI217Q) /CSM/SS/SSI2-A/SSI217Q.Seq.d/
XXXXXXXXXXGATAACTCTGGAACCTATATTATGGCCACTATCAAGTATAGTAATTCTTA
TCCTCCAAAGGAATTGACTGATAAGTTATGGAATAATGGGGTTTCAAAACAAGAATTTTT
CTTGTCAGCTTATGGTTGGAATTTAGCTACCTCGCTCACCTACTACAATACTACTAACCA
GTATAGTAATATCTTTAAATTAGCCTTTCCAACAATTAAAAATTTTACAGGAGTACCAAT
GCAATTTGTAATGACCAATGATGGTGATAATCTTGGTAATTTCACAGTCAAAACTCATTT
TGCAAAATTCTTTTCAACATATTACAGTGTTGGAGATCTTGGTCATCATTATTTCGACAT
TGCTGTAACTGATATTAACAAAAACAAGGTTGCAAATTTCACAGTTGACATTAAATTAAA
AGCTCTCGAAGGTAGTTATGTTTCAATCAAAACTGGTTCATTAGTTGTTCAGCCAGGTTA
TGCTGTTGGTAATCCAATTTGTAATCAAGGTAGTTATTCTCTAATGTTTTCTGCTTCAAT
TTTAATTCCAATTTATAAATCAGAATAAAAAAATAAAATCATCAGAATATAAAAACCAAT
TTATATTCTTATCAATTATTAAAAATTAAAAATAAAATAAAATAAAATAAAATAAAATCC
TTAATCGAAAAA

---NSGTYIMATIKYSNSYPPKELTDKLWNNGVSKQEFFLSAYGWNLATSLTYYNTTNQY
SNIFKLAFPTIKNFTGVPMQFVMTNDGDNLGNFTVKTHFAKFFSTYYSVGDLGHHYFDIA
VTDINKNKVANFTVDIKLKALEGSYVSIKTGSLVVQPGYAVGNPICNQGSYSLMFSASIL
IPIYKSE*knkiiri*kpiyiliny*klkik*nkik*np*sk

Frame A:
---itlepilwplssivililqrn*lisygimgfqnknfscqlmvgi*lprspttillts
ivisln*pfqqlkilqeyqcnl**pmmviilvisqsklilqnsfqhitvleilviiistl
l*liltktrlqisqltln*klskvvmfqsklvh*lfsqvmllviqfvikvvil*cfllqf
*fqfinqnkkiksseyknqfiflsiikn*k*nkik*nkilnrk


Frame B:
---*lwnlyyghyqv**flsskgid**vme*wgfktriflvslwlefsylahllqyy*pv
**yl*islsnn*kfyrstnaicndq*w**sw*fhsqnsfckilfnilqcwrswsslfrhc
cn*y*qkqgckfhs*h*ikssrr*lcfnqnwfiscsarlccw*snl*sr*lfsnvfcfnf
nsnl*irikk*nhqniktnlysyqllkiknkik*nkiksliek


Frame C:
---NSGTYIMATIKYSNSYPPKELTDKLWNNGVSKQEFFLSAYGWNLATSLTYYNTTNQY
SNIFKLAFPTIKNFTGVPMQFVMTNDGDNLGNFTVKTHFAKFFSTYYSVGDLGHHYFDIA
VTDINKNKVANFTVDIKLKALEGSYVSIKTGSLVVQPGYAVGNPICNQGSYSLMFSASIL
IPIYKSE*knkiiri*kpiyiliny*klkik*nkik*np*sk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ236 (VHQ236Q) /CSM/VH/VHQ2-B/VHQ236Q.Seq.d/                       1102   0.0
VHP336 (VHP336Q) /CSM/VH/VHP3-B/VHP336Q.Seq.d/                       1102   0.0
VHN619 (VHN619Q) /CSM/VH/VHN6-A/VHN619Q.Seq.d/                       1102   0.0
VHL687 (VHL687Q) /CSM/VH/VHL6-D/VHL687Q.Seq.d/                       1102   0.0
VHJ744 (VHJ744Q) /CSM/VH/VHJ7-B/VHJ744Q.Seq.d/                       1102   0.0
VHA438 (VHA438Q) /CSM/VH/VHA4-B/VHA438Q.Seq.d/                       1102   0.0
SSI217 (SSI217Q) /CSM/SS/SSI2-A/SSI217Q.Seq.d/                       1102   0.0
CHS135 (CHS135Q) /CSM/CH/CHS1-B/CHS135Q.Seq.d/                       1102   0.0
AHH492 (AHH492Q) /CSM/AH/AHH4-D/AHH492Q.Seq.d/                       1102   0.0
AHE755 (AHE755Q) /CSM/AH/AHE7-C/AHE755Q.Seq.d/                       1102   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AY282573|AY282573.1 Dictyostelium discoideum calcium up-regulated protein (cupG) gene, complete cds.  1007  0.0  1
AY282568|AY282568.1 Dictyostelium discoideum calcium up-regulated protein (cupB) gene, complete cds.   605  0.0  2
AY282572|AY282572.1 Dictyostelium discoideum calcium up-regulated protein (cupF) gene, complete cds.   281  e-113  6
AY282574|AY282574.1 Dictyostelium discoideum calcium up-regulated protein (cupA) gene, complete cds.   289  e-113  6
AY282569|AY282569.1 Dictyostelium discoideum calcium up-regulated protein (cupC) gene, complete cds.   258  e-103  6
AY282571|AY282571.1 Dictyostelium discoideum calcium up-regulated protein (cupE) gene, complete cds.   274  e-100  7
AY282570|AY282570.1 Dictyostelium discoideum calcium up-regulated protein (cupD) gene, complete cds.    48  1e-09  3
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    62  6e-06  7
AC091835|AC091835.2 Homo sapiens chromosome 5 clone CTD-2055E22, WORKING DRAFT SEQUENCE, 3 ordered pieces.    48  0.097  2
AC129007|AC129007.2 Rattus norvegicus clone CH230-1D11, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    46  0.55  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q7Z1Z9) RecName: Full=Calcium up-regulated protein G;  &AY28257...   360   2e-98
(Q7Z1I0) RecName: Full=Calcium up-regulated protein F;                286   3e-76
AY282572_1(AY282572|pid:none) Dictyostelium discoideum calcium u...   285   8e-76
(Q7Z202) RecName: Full=Calcium up-regulated protein C;  &AY28256...   281   9e-75
(Q54Z20) RecName: Full=Putative calcium up-regulated protein J;        65   2e-09
CP001182_1362(CP001182|pid:none) Acinetobacter baumannii AB0057,...    37   0.52
CP001172_2275(CP001172|pid:none) Acinetobacter baumannii AB307-0...    37   0.52
CP000084_920(CP000084|pid:none) Candidatus Pelagibacter ubique H...    36   1.2
CP001404_2331(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51...    35   1.5
CP000685_3705(CP000685|pid:none) Flavobacterium johnsoniae UW101...    35   1.5

 psg: 0.61  gvh: 0.49  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSI217 is cyt

>SSI217Z.Seq
----------GATAACTCTGGAACCTATATTATGGCCACTATCAAGTATAGTAATTCTTA
TCCTCCAAAGGAATTGACTGATAAGTTATGGAATAATGGGGTTTCAAAACAAGAATTTTT
CTTGTCAGCTTATGGTTGGAATTTAGCTACCTCGCTCACCTACTACAATACTACTAACCA
GTATAGTAATATCTTTAAATTAGCCTTTCCAACAATTAAAAATTTTACAGGAGTACCAAT
GCAATTTGTAATGACCAATGATGGTGATAATCTTGGTAATTTCACAGTCAAAACTCATTT
TGCAAAATTCTTTTCAACATATTACAGTGTTGGAGATCTTGGTCATCATTATTTCGACAT
TGCTGTAACTGATATTAACAAAAACAAGGTTGCAAATTTCACAGTTGACATTAAATTAAA
AGCTCTCGAAGGTAGTTATGTTTCAATCAAAACTGGTTCATTAGTTGTTCAGCCAGGTTA
TGCTGTTGGTAATCCAATTTGTAATCAAGGTAGTTATTCTCTAATGTTTTCTGCTTCAAT
TTTAATTCCAATTTATAAATCAGAATAAAAAAATAAAATCATCAGAATATAAAAACCAAT
TTATATTCTTATCAATTATTAAAAATTAAAAATAAAATAAAATAAAATAAAATAAAATCC
TTAATCGAAAAA