>SSI216 (SSI216Q) /CSM/SS/SSI2-A/SSI216Q.Seq.d/
XXXXXXXXXXTGATGAATCACTATATAAATTTGCACCATCATATACGGTAGTTGTAAAAG
GTGATATTAAAAAAGATGAGATTATAGTATCAAAAATCTTTAGACTATTACCAAAGCCAG
ATAAACCATTCAATTTCGATTCTGAATTGAATAATTTCTATATTGTAGATTCAAAAGAAA
CCAATTCAAATATTGAAATTAAGAAATTAAATAGTAACAAATCAGAGAAACTAAACTCAA
TTGAAAATAGTTACTCACAAGATGTATCGTTTGTTCCAATGGATTGGTTGGAATATAAGG
TTACCACTGGTGAATCTGTGTTCACAGTTAGTGGAAGAATAGATTCAAATAAAACCGTCT
CCATAGATTATATGTTTATTAGTTTACCTGATCCAAAATTATGTCCAAAGGAATTAATTG
CTGTTAGATGTGCCAATGGTACAATTCCAACCTATACTATCGCTGCAACTCGTTGTTTAT
CATTCAGTGGTTGTGTACATAGAGGAATTTGTCCATTGGTTGTTCCAGGTTGTTCTGGTG
GATACACTTTAAAATCATATGCGTCAAAACCAAATGGTTGTCCACGTTATTATTGCATCC
CATCATTTTTATCTTAATTTATTATTCCACAATCAAAATTCAAAAAATTAATTA

---DESLYKFAPSYTVVVKGDIKKDEIIVSKIFRLLPKPDKPFNFDSELNNFYIVDSKET
NSNIEIKKLNSNKSEKLNSIENSYSQDVSFVPMDWLEYKVTTGESVFTVSGRIDSNKTVS
IDYMFISLPDPKLCPKELIAVRCANGTIPTYTIAATRCLSFSGCVHRGICPLVVPGCSGG
YTLKSYASKPNGCPRYYCIPSFLS*fiipqskfkkli

Frame A:
---DESLYKFAPSYTVVVKGDIKKDEIIVSKIFRLLPKPDKPFNFDSELNNFYIVDSKET
NSNIEIKKLNSNKSEKLNSIENSYSQDVSFVPMDWLEYKVTTGESVFTVSGRIDSNKTVS
IDYMFISLPDPKLCPKELIAVRCANGTIPTYTIAATRCLSFSGCVHRGICPLVVPGCSGG
YTLKSYASKPNGCPRYYCIPSFLS*fiipqskfkkli


Frame B:
---mnhyinlhhhir*l*kvilkkmrl*yqksldyyqsqinhsisiln*iisil*iqkkp
iqilklrn*ivtnqrn*tqlkivthkmyrlfqwigwnirlplvnlcsqlvee*iqikpsp
*iicllvyliqnyvqrn*llldvpmvqfqpilslqlvvyhsvvvyieefvhwlfqvvlvd
tl*nhmrqnqmvvhviiashhfylnllfhnqnskn*l


Frame C:
---*iti*ictiiygsckr*y*kr*dysiknl*titkar*tiqfrf*ie*flycrfkrnq
fky*n*eik**qiretkln*k*lltrcivcsnglvgi*gyhw*icvhs*wknrfk*nrlh
rlyvy*ft*skimskgincc*mcqwynsnlyyrcnslfiiqwlct*rnlsigcsrlfwwi
hfkiicvktkwlstlllhpiifiliyystikiqkin

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI216 (SSI216Q) /CSM/SS/SSI2-A/SSI216Q.Seq.d/                       1277   0.0
SSF374 (SSF374Q) /CSM/SS/SSF3-D/SSF374Q.Seq.d/                       1277   0.0
SSJ364 (SSJ364Q) /CSM/SS/SSJ3-C/SSJ364Q.Seq.d/                       1263   0.0
SSA302 (SSA302Q) /CSM/SS/SSA3-A/SSA302Q.Seq.d/                       1263   0.0
SSL161 (SSL161Q) /CSM/SS/SSL1-C/SSL161Q.Seq.d/                       1253   0.0
SSD388 (SSD388Q) /CSM/SS/SSD3-D/SSD388Q.Seq.d/                       1237   0.0
SSM142 (SSM142Q) /CSM/SS/SSM1-B/SSM142Q.Seq.d/                       1225   0.0
CHM132 (CHM132Q) /CSM/CH/CHM1-B/CHM132Q.Seq.d/                       1203   0.0
SSH142 (SSH142Q) /CSM/SS/SSH1-B/SSH142Q.Seq.d/                       1191   0.0
SSD122 (SSD122Q) /CSM/SS/SSD1-A/SSD122Q.Seq.d/                       1160   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116921|AC116921.2 Dictyostelium discoideum chromosome 2 map 4624505-4657775 strain AX4, complete sequence.  1277  0.0  1
AE006797|AE006797.1 Sulfolobus solfataricus section 156 of 272 of the complete genome.    50  0.034  1
AP000870|AP000870.5 Homo sapiens genomic DNA, chromosome 11 clone:RP11-697H10, complete sequence.    42  0.097  3
BH152199|BH152199.1 ENTPU08TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    34  0.22  3
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    36  0.92  7
M10126|M10126.1 Leishmania tarentolae kinetoplast pre-edited mitochondrial maxicircle DNA complete transcribed region and flanks.    38  1.2  3
BX323086|BX323086.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-170I11.    36  1.5  4
BZ903129|BZ903129.1 CH240_24A3.TJ CHORI-240 Bos taurus genomic clone CH240_24A3, DNA sequence.    30  1.6  3
BC043774|BC043774.1 Xenopus laevis, Similar to general transcription factor II E, polypeptide 1 (alpha subunit, 56kDa), clone MGC:52978 IMAGE:4930700, mRNA, complete cds.    36  1.7  2
AC006228|AC006228.5 Genomic sequence for Arabidopsis thaliana BAC F5J5, complete sequence.    34  1.9  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116921_3(AC116921|pid:none) Dictyostelium discoideum chromosom...   372   e-102
AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromos...    82   1e-14
AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromos...    75   2e-12
AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromos...    60   7e-08
T16840(T16840)hypothetical protein T10E10.4 - Caenorhabditis ele...    35   1.4
U39644_2(U39644|pid:none) Caenorhabditis elegans cosmid T10E10, ...    35   1.4
EF083471_1(EF083471|pid:none) Picea sitchensis clone WS02716_L14...    34   4.2
AE014188_321(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    34   4.2
AB070946_6(AB070946|pid:none) Streptomyces avermitilis polyketid...    33   5.5
CP000656_6(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, comp...    33   7.2

 psg: 0.75  gvh: 0.17  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 32.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for SSI216 is nuc

>SSI216Z.Seq
----------TGATGAATCACTATATAAATTTGCACCATCATATACGGTAGTTGTAAAAG
GTGATATTAAAAAAGATGAGATTATAGTATCAAAAATCTTTAGACTATTACCAAAGCCAG
ATAAACCATTCAATTTCGATTCTGAATTGAATAATTTCTATATTGTAGATTCAAAAGAAA
CCAATTCAAATATTGAAATTAAGAAATTAAATAGTAACAAATCAGAGAAACTAAACTCAA
TTGAAAATAGTTACTCACAAGATGTATCGTTTGTTCCAATGGATTGGTTGGAATATAAGG
TTACCACTGGTGAATCTGTGTTCACAGTTAGTGGAAGAATAGATTCAAATAAAACCGTCT
CCATAGATTATATGTTTATTAGTTTACCTGATCCAAAATTATGTCCAAAGGAATTAATTG
CTGTTAGATGTGCCAATGGTACAATTCCAACCTATACTATCGCTGCAACTCGTTGTTTAT
CATTCAGTGGTTGTGTACATAGAGGAATTTGTCCATTGGTTGTTCCAGGTTGTTCTGGTG
GATACACTTTAAAATCATATGCGTCAAAACCAAATGGTTGTCCACGTTATTATTGCATCC
CATCATTTTTATCTTAATTTATTATTCCACAATCAAAATTCAAAAAATTAATTA