>SSI215 (SSI215Q) /CSM/SS/SSI2-A/SSI215Q.Seq.d/
XXXXXXXXXXCAATTAAGAGATTTGTTCAATGGAGAGGGTTAATATTTTTACAACCTCAT
TTCATATCAATGAGGATAAAAGTGAACTTTCTCAACTCTTTATTGACAATTGCATTGAAA
AGGGTGTTAGTGCCGTTCCACATTTGGTGTATAATGGTGCATCTTCATTACTCACAATTG
ATGTCAATGGTGAAGAATATGAAATCAGCAGAAAAAGATTAAATGGTTTGTCAAACTACA
TCAAAAGTGTTTACTCAACTGGAGATTTGCTTGAACCTCAAGATCACATTTTTGGTAAAA
TCCATCCAAGTAGAACTTTTCAAAGAACTTTGAAGAAATACTATATGTTTATGAAACGTA
TTAGTGAATTACTTGACAACTAAAATCAACAAGATGTTCCAAACTCAAATCATTCAAAAA
AAAAAAAAAACAAATTATCTAAAAAAGGTTTTTTAATATAAAACTAAGTTGTTTAACCCA
AATTGGTTTTATTTACAAGTGAAATTAAAAAAATTTCCACTACATAAGTTAAATATAATT
TTTATGTTTATTTATTTTAAAATAAAATAAAATAAAACAAAATAGAAATCTAAATGATTT
TTATTTTTTTAATTGGTGCTTTGAATAAAATAAAATAAAAAAAAAAAAAA

---n*EICSMERVNIFTTSFHINEDKSELSQLFIDNCIEKGVSAVPHLVYNGASSLLTID
VNGEEYEISRKRLNGLSNYIKSVYSTGDLLEPQDHIFGKIHPSRTFQRTLKKYYMFMKRI
SELLDN*nqqdvpnsnhskkkknklskkgfli*n*vv*pklvlftseikkistt*vkynf
yvylf*nkik*nkiei*mififligalnkik*kkkk

Frame A:
---n*EICSMERVNIFTTSFHINEDKSELSQLFIDNCIEKGVSAVPHLVYNGASSLLTID
VNGEEYEISRKRLNGLSNYIKSVYSTGDLLEPQDHIFGKIHPSRTFQRTLKKYYMFMKRI
SELLDN*nqqdvpnsnhskkkknklskkgfli*n*vv*pklvlftseikkistt*vkynf
yvylf*nkik*nkiei*mififligalnkik*kkkk


Frame B:
---ikrfvqwrgliflqphfismrikvnflnslltialkrvlvpfhiwcimvhlhysqlm
smvknmksaekd*mvcqttskvftqleiclnlkitflvksiqvelfkel*rnticl*nvl
vnylttkinkmfqtqiiqkkkktnylkkvf*yktklfnpnwfylqvklkkfplhklniif
mfiyfkik*nktk*ksk*flff*lvl*ik*nkkkk


Frame C:
---lrdlfngeg*yfynlisyq*g*k*tfstly*qlh*kgc*crstfgv*wcifithn*c
qw*ri*nqqkkikwfvklhqkcllnwrfa*tsrshfw*npsk*nfsknfeeilyvyety*
*it*qlkstrcsklksfkkkkkqii*krffniklscltqigfiyk*n*knfhyis*i*fl
clfilk*nkikqnrnlndfyffnwcfe*nkikkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI215 (SSI215Q) /CSM/SS/SSI2-A/SSI215Q.Seq.d/                        803   0.0
VSC830 (VSC830Q) /CSM/VS/VSC8-B/VSC830Q.Seq.d/                        787   0.0
SSM714 (SSM714Q) /CSM/SS/SSM7-A/SSM714Q.Seq.d/                        787   0.0
SSM290 (SSM290Q) /CSM/SS/SSM2-D/SSM290Q.Seq.d/                        787   0.0
SSK841 (SSK841Q) /CSM/SS/SSK8-B/SSK841Q.Seq.d/                        787   0.0
SSK556 (SSK556Q) /CSM/SS/SSK5-C/SSK556Q.Seq.d/                        787   0.0
SSK444 (SSK444Q) /CSM/SS/SSK4-B/SSK444Q.Seq.d/                        787   0.0
SSK289 (SSK289Q) /CSM/SS/SSK2-D/SSK289Q.Seq.d/                        787   0.0
SSI322 (SSI322Q) /CSM/SS/SSI3-A/SSI322Q.Seq.d/                        787   0.0
SSH888 (SSH888Q) /CSM/SS/SSH8-D/SSH888Q.Seq.d/                        787   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   743  0.0  4
BF687688|BF687688.1 602066722F1 NIH_MGC_57 Homo sapiens cDNA clone IMAGE:4065917 5', mRNA sequence.    40  0.13  2
AF421218|AF421218.1 Mastigamoeba simplex 18S ribosomal RNA gene, complete sequence.    36  1.7  2
AJ227093|AJ227093.1 Ciona intestinalis genomic fragment, clone 2B8.    44  2.1  1
AG123279|AG123279.1 Pan troglodytes DNA, clone: PTB-132O04.F.     44  2.1  1
BH720472|BH720472.1 BOMON50TR BO_2_3_KB Brassica oleracea genomic clone BOMON50, DNA sequence.    34  2.2  2
AL451145|AL451145.15 Human DNA sequence from clone RP11-164A17 on chromosome 6.    34  2.4  3
AC126179|AC126179.8 Homo sapiens 12 BAC RP11-593H4 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44  3.2  2
AG249028|AG249028.1 Lotus corniculatus var. japonicus DNA, clone:LjT24b22_not.    30  4.5  3
X55026|X55026.1 Podospora anserina complete mitochondrial genome.    36  4.8  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86I43) RecName: Full=Uncharacterized protein DDB_G0275161;  &A...   229   5e-60
AE017332_42(AE017332|pid:none) Mycoplasma hyopneumoniae 232, com...    36   0.84
AE017244_42(AE017244|pid:none) Mycoplasma hyopneumoniae 7448, co...    36   0.84
AY820142_1(AY820142|pid:none) Brassica rapa disease resistance-l...    34   4.1
AL670542_12(AL670542|pid:none) Neurospora crassa DNA linkage gro...    34   4.1
CP000312_850(CP000312|pid:none) Clostridium perfringens SM101, c...    33   9.2
EU304328_12(EU304328|pid:none) Ostreococcus virus OsV5, complete...    33   9.2

 psg: 0.75  gvh: 0.47  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSI215 is cyt

>SSI215Z.Seq
----------CAATTAAGAGATTTGTTCAATGGAGAGGGTTAATATTTTTACAACCTCAT
TTCATATCAATGAGGATAAAAGTGAACTTTCTCAACTCTTTATTGACAATTGCATTGAAA
AGGGTGTTAGTGCCGTTCCACATTTGGTGTATAATGGTGCATCTTCATTACTCACAATTG
ATGTCAATGGTGAAGAATATGAAATCAGCAGAAAAAGATTAAATGGTTTGTCAAACTACA
TCAAAAGTGTTTACTCAACTGGAGATTTGCTTGAACCTCAAGATCACATTTTTGGTAAAA
TCCATCCAAGTAGAACTTTTCAAAGAACTTTGAAGAAATACTATATGTTTATGAAACGTA
TTAGTGAATTACTTGACAACTAAAATCAACAAGATGTTCCAAACTCAAATCATTCAAAAA
AAAAAAAAAACAAATTATCTAAAAAAGGTTTTTTAATATAAAACTAAGTTGTTTAACCCA
AATTGGTTTTATTTACAAGTGAAATTAAAAAAATTTCCACTACATAAGTTAAATATAATT
TTTATGTTTATTTATTTTAAAATAAAATAAAATAAAACAAAATAGAAATCTAAATGATTT
TTATTTTTTTAATTGGTGCTTTGAATAAAATAAAATAAAAAAAAAAAAAA