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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI204
Library SS
(Link to library)
Clone ID SSI204
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14396-1
Original site URL
Representative seq. ID SSI204E
(Link to Original site)
Representative DNA sequence 
>SSI204 (SSI204Q) /CSM/SS/SSI2-A/SSI204Q.Seq.d/
AAATAACCAATTAAAATAAAATAAATTATTAAATTTAAAAATGAAATTATTATTAGTTTT
ATTATCTCTTCTTTTAACATTTTCAGTATTGGTACAATCTGAAGAAGCCTATTTTGCTTT
AAAAACCTATCAAGACAATGATTTTATTTTCAAATTAACTGATTCAGAAAAAAATACAAA
AAGCCAGAGATATTTTGTCTGGAAAGGAAACTGAAGAAGTTCATGTAATGGGTAGAATTA
GAAAGTCAAATAAAGACTATAATCCAAAGTATTCCTTTCATATTGACCCAGATACAGTCA
CATTTTTCAGTATGGCCATTGAAGTTTGTGATGCTACAGCTAGTTATGTAGAAGATTACC
TTGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGTCCATGGGCTTCAAAGC
TAACAAAAGAAATTAAAGTTTAAGAGTTAAATCAAATTAGCCATGATAAATCAAATTAAA
TAATTTTTAAAAAAATTATTAATAAAGTTTTTTTTAACTAAAGTTTTTATAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997.12.25
Translated Amino Acid sequence 
itn*nkiny*i*k*nyy*fyylff*hfqywynlkkpill*kpiktmilfsn*LIQKKIQK
ARDILSGKETEEVHVMGRIRKSNKDYNPKYSFHIDPDTVTFFSMAIEVCDATASYVEDYL
DEACGAFLPGCFWCPWASKLTKEIKV*elnqishdksn*iifkkiinkvffn*sfykkkk
kkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
k*pikik*iikfkneiiisfiissfnifsigti*rslfcfknlsrq*fyfqin*frkkyk
kpeifclerklkkfm*wvelesqiktiiqsipfiltqiqshfsvwplkfvmlqlvm*kit
lmrpvvlssqvasgvhglqs*qkklkfks*iklaminqik*flkkllikffltkvfikkk
kkkkkkkkkkk


Frame B:
nnqlk*nkllnlkmklllvllsllltfsvlvqseeayfalktyqdndfifkltdsekntk
sqryfvwkgn*rsscng*n*kvk*rl*skvflsy*pryshifqygh*sl*cys*lcrrlp
**glwcfpprlllvsmgfkankrn*slrvksn*p**iklnnf*kny**sff*lkfl*kkk
kkkkkkkkkk


Frame C:
itn*nkiny*i*k*nyy*fyylff*hfqywynlkkpill*kpiktmilfsn*LIQKKIQK
ARDILSGKETEEVHVMGRIRKSNKDYNPKYSFHIDPDTVTFFSMAIEVCDATASYVEDYL
DEACGAFLPGCFWCPWASKLTKEIKV*elnqishdksn*iifkkiinkvffn*sfykkkk
kkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI204 (SSI204Q) /CSM/SS/SSI2-A/SSI204Q.Seq.d/                        854   0.0
SSM564 (SSM564Q) /CSM/SS/SSM5-C/SSM564Q.Seq.d/                        844   0.0
SSM346 (SSM346Q) /CSM/SS/SSM3-B/SSM346Q.Seq.d/                        844   0.0
SSK104 (SSK104Q) /CSM/SS/SSK1-A/SSK104Q.Seq.d/                        844   0.0
SSJ895 (SSJ895Q) /CSM/SS/SSJ8-D/SSJ895Q.Seq.d/                        844   0.0
SSI384 (SSI384Q) /CSM/SS/SSI3-D/SSI384Q.Seq.d/                        844   0.0
SSG802 (SSG802Q) /CSM/SS/SSG8-A/SSG802Q.Seq.d/                        844   0.0
SSG503 (SSG503Q) /CSM/SS/SSG5-A/SSG503Q.Seq.d/                        844   0.0
SSF786 (SSF786Q) /CSM/SS/SSF7-D/SSF786Q.Seq.d/                        844   0.0
SSF548 (SSF548Q) /CSM/SS/SSF5-B/SSF548Q.Seq.d/                        844   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF140044|AF140044.1 Dictyostelium discoideum putative calmodulin-binding protein CaM-BP15 mRNA, complete cds.   182  e-109  6
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.   145  3e-70  7
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.   141  9e-29  2
BZ367707|BZ367707.1 id06b02.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum bicolor genomic clone id06b02 5', DNA sequence.    54  0.002  1
AC016040|AC016040.6 Homo sapiens chromosome 18 clone RP11-164O16 map 18, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44  0.005  5
CB017813|CB017813.1 pgn1c.pk017.j5 Chicken lymphoid cDNA library (pgn1c) Gallus gallus cDNA clone pgn1c.pk017.j5 5' similar to no significant hits (pLog(P ) 4), mRNA sequence.    52  0.008  1
AL732328|AL732328.12 Mouse DNA sequence from clone RP23-106P4 on chromosome 2.    38  0.019  3
BX511143|BX511143.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-258H10.    44  0.048  3
Z19055|Z19055.1 B.aphidicola tryptophan operon.                   32  0.053  4
AC108763|AC108763.1 Oryza sativa chromosome 9 clone OSJNBb0004A05, *** SEQUENCING IN PROGRESS ***, 15 ordered pieces.    44  0.074  2
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ...   161   4e-47
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com...   123   3e-27
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...   115   1e-24
CP001618_2965(CP001618|pid:none) Beutenbergia cavernae DSM 12333...    45   0.001
AC115604_1(AC115604|pid:none) Dictyostelium discoideum chromosom...    45   0.001
CP000821_153(CP000821|pid:none) Shewanella sediminis HAW-EB3, co...    33   7.1
protein update 2009. 7. 8
PSORT 

 psg: 0.58  gvh: 0.54  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SSI204 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSI204E
Full length Seq. 
>SSI204E.Seq
AAATAACCAATTAAAATAAAATAAATTATTAAATTTAAAAATGAAATTATTATTAGTTTT
ATTATCTCTTCTTTTAACATTTTCAGTATTGGTACAATCTGAAGAAGCCTATTTTGCTTT
AAAAACCTATCAAGACAATGATTTTATTTTCAAATTAACTGATTCAGAAAAAAATACAAA
AAGCCAGAGATATTTTGTCTGGAAAGGAAACTGAAGAAGTTCATGTAATGGGTAGAATTA
GAAAGTCAAATAAAGACTATAATCCAAAGTATTCCTTTCATATTGACCCAGATACAGTCA
CATTTTTCAGTATGGCCATTGAAGTTTGTGATGCTACAGCTAGTTATGTAGAAGATTACC
TTGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGTCCATGGGCTTCAAAGC
TAACAAAAGAAATTAAAGTTTAAGAGTTAAATCAAATTAGCCATGATAAATCAAATTAAA
TAATTTTTAAAAAAATTATTAATAAAGTTTTTTTTAACTAAAGTTTTTATAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 573