SSI193
Library SS
(Link to library)
Clone ID SSI193
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14703-1
Original site URL
Representative seq. ID SSI193Z
(Link to Original site)
Representative DNA sequence
>SSI193 (SSI193Q) /CSM/SS/SSI1-D/SSI193Q.Seq.d/
XXXXXXXXXXGATTTACAATCTGCAACTGGCACTCAAGTTAAATGATGAACAAGTTAAAC
CATTAACTCCAACAACTGTTAAAGAAAACTTCACTTTTAAATTTGGTTCATCATCAAAAC
ATTTTATATTAAAAGGCACTGTAAATACAAATCCATCATCTTCTTCATCATCATCATCAT
CATCATCATCAGAACCAAAAACAGTCACTTGCCGTCATCTTTTAGTTAAACATCAAGGTT
CAAGAAATCCATCATCTTGGAGGGAATCTAAAATTACAAGAACCAAAGAAAGAGCAATCG
CTAAACTTAATGAATATAGAGCAACAATTATATCTGGTTCTGCCACATTTGAAGATTTAG
CTCATAAAAATTCAGATTGTAGCAGTGCTAAAAGAGGTGGCTATCTTGATCCATTCAAAA
GAGGCCAAATGCAAAGACCTTTTGAAGATTGCGCATTTTCTTTAAAAGTTGGTGAAGTTA
GTGGCATTGTAGATACTGACTCAGGTGTTCATATTATTGAAAGATTAGNNTNNATAGTNN
TNAATTATAATAGTATATATATATTTTTTAATATTGAATCACTGTTTATTCTATAGTTTA
TATTTATGTAAATCAATAAAAAAATATACATCCAAAGAAA
sequence update 1997.12.25
Translated Amino Acid sequence
---IYNLQLALKLNDEQVKPLTPTTVKENFTFKFGSSSKHFILKGTVNTNPSSSSSSSSS
SSSEPKTVTCRHLLVKHQGSRNPSSWRESKITRTKERAIAKLNEYRATIISGSATFEDLA
HKNSDCSSAKRGGYLDPFKRGQMQRPFEDCAFSLKVGEVSGIVDTDSGVHIIERLXXIVX
NYNSIYIFFNIESLFIL*fifm*inkkiyiqr


Translated Amino Acid sequence (All Frames)
Frame A:
---IYNLQLALKLNDEQVKPLTPTTVKENFTFKFGSSSKHFILKGTVNTNPSSSSSSSSS
SSSEPKTVTCRHLLVKHQGSRNPSSWRESKITRTKERAIAKLNEYRATIISGSATFEDLA
HKNSDCSSAKRGGYLDPFKRGQMQRPFEDCAFSLKVGEVSGIVDTDSGVHIIERLXXIVX
NYNSIYIFFNIESLFIL*fifm*inkkiyiqr


Frame B:
---fticnwhss*mmnklnh*lqqllkktsllnlvhhqnily*kal*iqihhllhhhhhh
hhqnqkqslavif*lnikvqeihhlggnlklqepkkeqslnlmnieqqlylvlphlki*l
ikiqivavlkevailihskeakckdllkiahfl*klvklval*iltqvfillkd*xx*xx
iiivyiyflilnhclfyslylcksikkytske


Frame C:
---lqsatgtqvk**ts*tinsnnc*rklhf*iwfiiktfyikrhckyksiiffiiiiii
iirtknshlpssfs*tsrfkksiilegi*nyknqrksnr*t**i*snnyiwfchi*rfss
*kfrl*qc*krwls*siqkrpnaktf*rlriffksw*s*whcry*lrcsyy*kixxxsxx
l**yiyif*y*itvysivyiyvnq*knihpkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSI193 (SSI193Q) /CSM/SS/SSI1-D/SSI193Q.Seq.d/ 668 0.0
SSF124 (SSF124Q) /CSM/SS/SSF1-A/SSF124Q.Seq.d/ 660 0.0
SSA808 (SSA808Q) /CSM/SS/SSA8-A/SSA808Q.Seq.d/ 660 0.0
SSD494 (SSD494Q) /CSM/SS/SSD4-D/SSD494Q.Seq.d/ 601 e-171
VHJ605 (VHJ605Q) /CSM/VH/VHJ6-A/VHJ605Q.Seq.d/ 428 e-119
SLB374 (SLB374Q) /CSM/SL/SLB3-D/SLB374Q.Seq.d/ 38 0.16
FC-AE01 (FC-AE01Q) /CSM/FC/FC-AE/FC-AE01Q.Seq.d/ 38 0.16
VHK659 (VHK659Q) /CSM/VH/VHK6-C/VHK659Q.Seq.d/ 36 0.63
VHC803 (VHC803Q) /CSM/VH/VHC8-A/VHC803Q.Seq.d/ 36 0.63
SHH439 (SHH439Q) /CSM/SH/SHH4-B/SHH439Q.Seq.d/ 36 0.63

own update 2004. 7.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U78757|U78757.1 Dictyostelium discoideum PinA (pinA) mRNA, partial cds. 660 0.0 3
BU927305|BU927305.1 sas98a01.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-11930 5' similar to TR:P90527 P90527 PINA ;, mRNA sequence. 48 0.13 1
CD409701|CD409701.1 Gm_ck36847 Soybean induced by Salicylic Acid Glycine max cDNA 3', mRNA sequence. 48 0.13 1
AW397670|AW397670.1 sg82g12.y1 Gm-c1026 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1026-287 5' similar to TR:P90527 P90527 PINA ;, mRNA sequence. 48 0.13 1
BM887185|BM887185.1 sam35c10.y1 Gm-c1068 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1068-6667 5' similar to TR:P90527 P90527 PINA ;, mRNA sequence. 48 0.13 1
AI496600|AI496600.1 sb13h01.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-8714 5' similar to TR:Q42334 Q42334 PEPTIDYL PROLYL CIS-TRANS ISOMERASE ;, mRNA sequence. 48 0.13 1
BM526266|BM526266.1 sal39a06.y1 Gm-c1059 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1059-4260 5' similar to TR:P90527 P90527 PINA ;, mRNA sequence. 48 0.13 1
BI971073|BI971073.1 GM830012A20G07 Gm-r1083 Glycine max cDNA clone Gm-r1083-4526 3', mRNA sequence. 48 0.13 1
CA953393|CA953393.1 sav56b11.y1 Gm-c1069 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1069-7005 5' similar to TR:P90527 P90527 PINA ;, mRNA sequence. 48 0.13 1
AC120676|AC120676.4 Rattus norvegicus clone CH230-38D7, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 48 0.13 1
dna update 2003. 7.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U78757_1(U78757|pid:none) Dictyostelium discoideum PinA (pinA) m... 303 2e-81
DQ311303_1(DQ311303|pid:none) Bombyx mori rotamase Pin1 mRNA, co... 144 3e-33
(P54353) RecName: Full=Protein dodo; &AE014298_3237(AE014298|pi... 137 2e-31
AF017777_3(AF017777|pid:none) Drosophila melanogaster tweety (tt... 137 2e-31
AY888683_1(AY888683|pid:none) Synthetic construct Homo sapiens c... 134 3e-30
BT076892_1(BT076892|pid:none) Caligus rogercresseyi clone crog-e... 134 3e-30
(Q4R383) RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-... 134 3e-30
(Q5BIN5) RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-... 134 3e-30
AK139395_1(AK139395|pid:none) Mus musculus 10 days neonate corte... 132 8e-30
AY813618_1(AY813618|pid:none) Schistosoma japonicum SJCHGC06702 ... 132 8e-30
protein update 2009. 6.13
PSORT

psg: 0.44 gvh: 0.47 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SSI193 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI193Z
3' end seq.
>SSI193Z.Seq
----------GATTTACAATCTGCAACTGGCACTCAAGTTAAATGATGAACAAGTTAAAC
CATTAACTCCAACAACTGTTAAAGAAAACTTCACTTTTAAATTTGGTTCATCATCAAAAC
ATTTTATATTAAAAGGCACTGTAAATACAAATCCATCATCTTCTTCATCATCATCATCAT
CATCATCATCAGAACCAAAAACAGTCACTTGCCGTCATCTTTTAGTTAAACATCAAGGTT
CAAGAAATCCATCATCTTGGAGGGAATCTAAAATTACAAGAACCAAAGAAAGAGCAATCG
CTAAACTTAATGAATATAGAGCAACAATTATATCTGGTTCTGCCACATTTGAAGATTTAG
CTCATAAAAATTCAGATTGTAGCAGTGCTAAAAGAGGTGGCTATCTTGATCCATTCAAAA
GAGGCCAAATGCAAAGACCTTTTGAAGATTGCGCATTTTCTTTAAAAGTTGGTGAAGTTA
GTGGCATTGTAGATACTGACTCAGGTGTTCATATTATTGAAAGATTAGNNTNNATAGTNN
TNAATTATAATAGTATATATATATTTTTTAATATTGAATCACTGTTTATTCTATAGTTTA
TATTTATGTAAATCAATAAAAAAATATACATCCAAAGAAA
Length of 3' end seq. 630
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -