>SSI192 (SSI192Q) /CSM/SS/SSI1-D/SSI192Q.Seq.d/
XXXXXXXXXXTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTAACATT
ACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGCA
ATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGGGCCAAAA
TGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAA
GATGATGAAGGTCCAGTTTTAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGAT
AATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTAT
TGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCA
AAGGATAGAAAGAATAATTGTGGTATTGCATCAGTTAGCTCTTATCCACTTGCCTAGATT
TATGGTTCCAAAATGAATAGGAGAATGTTTGGATCTATCTAGTAACCTGAAATGTTTTTC
TATTAAAAAAATAAAAATAAAAATAATAATTTCTAATTGTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA

---FNKSDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYGPKC
SPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYW
IVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemffy
*knknknnnf*l*kkkkkkkkkkkkkk

Frame A:
---iq*i*ywcnh*rlc*hycrfrdfirewcstwssiccn*cfp**fptlyiwyllwakm
fsn*igswcfscwlwcsr*r**rssfkqktnhcypqe*r**s*il**fi**c*tkgk*ll
dr*kfmgylmgykrlhfnvkg*ke*lwycis*llstcldlwfqne*envwiylvt*nvfl
lkk*k*k**flivkkkkkkkkkkkkkkk


Frame B:
---FNKSDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYGPKC
SPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYW
IVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemffy
*knknknnnf*l*kkkkkkkkkkkkkk


Frame C:
---sinlilvqplkvmltllpvqrfh*rmvlnmvqyllqlmlpiivsnsihlvsimgqnv
lqlnwimvf*llvmvfkvkmmkvqf*tenkpllstrmkiiklnplmihlivldqrqiiig
slkihgvphgv*kvtf*cqrieriivvlhqlalihlprfmvpk*igecldlssnlkcfsi
kkikikiiisnckkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI192 (SSI192Q) /CSM/SS/SSI1-D/SSI192Q.Seq.d/                       1059   0.0
SSM544 (SSM544Q) /CSM/SS/SSM5-B/SSM544Q.Seq.d/                       1043   0.0
SSM471 (SSM471Q) /CSM/SS/SSM4-C/SSM471Q.Seq.d/                       1043   0.0
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                       1043   0.0
SSK734 (SSK734Q) /CSM/SS/SSK7-B/SSK734Q.Seq.d/                       1043   0.0
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/                       1043   0.0
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/                       1043   0.0
SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/                       1043   0.0
SSI550 (SSI550Q) /CSM/SS/SSI5-C/SSI550Q.Seq.d/                       1043   0.0
SSG787 (SSG787Q) /CSM/SS/SSG7-D/SSG787Q.Seq.d/                       1043   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.  1043  0.0  2
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.   781  0.0  4
BJ171907|BJ171907.1 Physcomitrella patens subsp. patens cDNA clone:pph30i20, 3' end, single read.   488  e-149  2
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds.    88  8e-35  5
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.    76  2e-27  3
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    88  5e-27  4
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds.    82  9e-12  1
AF426414|AF426414.1 Delia radicum cathepsin L-like cysteine protease precursor (CP1) mRNA, complete cds.    56  3e-08  2
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds.    46  3e-07  3
BP188323|BP188323.1 Dugesia japonica cDNA, clone: 02616_HH, expressed in the head.    50  2e-06  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   298   8e-80
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   153   4e-36
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   153   4e-36
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   140   4e-32
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...   139   5e-32
AY336797_1(AY336797|pid:none) Rhipicephalus haemaphysaloides hae...   137   2e-31
AY207373_1(AY207373|pid:none) Tenebrio molitor cathepsin L-like ...   136   5e-31
AY332271_1(AY332271|pid:none) Tenebrio molitor cathepsin-L-like ...   135   7e-31
BC074718_1(BC074718|pid:none) Xenopus tropicalis MGC69486 protei...   135   9e-31
BT057383_1(BT057383|pid:none) Salmo salar clone ssal-evf-519-083...   135   1e-30

 psg: 0.81  gvh: 0.39  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SSI192 is cyt

>SSI192Z.Seq
----------TATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTAACATT
ACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGCA
ATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGGGCCAAAA
TGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAA
GATGATGAAGGTCCAGTTTTAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGAT
AATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTAT
TGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCA
AAGGATAGAAAGAATAATTGTGGTATTGCATCAGTTAGCTCTTATCCACTTGCCTAGATT
TATGGTTCCAAAATGAATAGGAGAATGTTTGGATCTATCTAGTAACCTGAAATGTTTTTC
TATTAAAAAAATAAAAATAAAAATAATAATTTCTAATTGTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA