>SSI188 (SSI188Q) /CSM/SS/SSI1-D/SSI188Q.Seq.d/
XXXXXXXXXXAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATT
GTCAACAAAGTTAATTCAACTGCTGGTTCATATGAAATGACCATTACTCCATACCAAGTT
GATAAGGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTACT
CCACCAGATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAACACATACACCATATGAC
TATGTTGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAACTGGCCAAGTTACAGTT
ATTAAAAAAGATGAGACATTCCCAAAGAATATGACTGTTACACAAGATGATATTTTATCT
TTCATCTTTAACTTAAACTCTGAAAAATAAAACAATATGTTTTTTTTTCTCTTTAAGAAA
ACTTTAAATAATAAAATTATGAATTTCAGAAATTAAAAAAAAAAA

---FQVLPGAFQWAVDVKIVNKVNSTAGSYEMTITPYQVDKVACKDGDDFVQLPIPKLTP
PDSEIVSHLTVRQTHTPYDYVVNGSVYFKYSPTTGQVTVIKKDETFPKNMTVTQDDILSF
IFNLNSEK*nnmffflfkktlnnkimnfrn*kkk

Frame A:
---vpsltrsfsmgs*c*ncqqs*fncwfi*ndhysips**gclqrw**lcsiansktys
trf*nc*pfnsssntyti*lcckwkcll*ilpnnwpsysy*kr*dipkeydcytr*yfif
hl*lkl*kikqyvffsl*enfk**nyefqklkkk


Frame B:
---FQVLPGAFQWAVDVKIVNKVNSTAGSYEMTITPYQVDKVACKDGDDFVQLPIPKLTP
PDSEIVSHLTVRQTHTPYDYVVNGSVYFKYSPTTGQVTVIKKDETFPKNMTVTQDDILSF
IFNLNSEK*nnmffflfkktlnnkimnfrn*kkk


Frame C:
---sksyqelfngqlmlklstkliqllvhmk*pllhtklirllakmvmtlfncqfqnllh
qilkllai*qfvkhihhmtml*mevftlntpqqlaklqllkkmrhsqri*llhkmifyls
slt*tlknkticfffslrkl*iikl*iseikkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI188 (SSI188Q) /CSM/SS/SSI1-D/SSI188Q.Seq.d/                        827   0.0
VSC180 (VSC180Q) /CSM/VS/VSC1-D/VSC180Q.Seq.d/                        803   0.0
VSB653 (VSB653Q) /CSM/VS/VSB6-C/VSB653Q.Seq.d/                        803   0.0
SSM611 (SSM611Q) /CSM/SS/SSM6-A/SSM611Q.Seq.d/                        803   0.0
SSK866 (SSK866Q) /CSM/SS/SSK8-C/SSK866Q.Seq.d/                        803   0.0
SSK494 (SSK494Q) /CSM/SS/SSK4-D/SSK494Q.Seq.d/                        803   0.0
SSJ220 (SSJ220Q) /CSM/SS/SSJ2-A/SSJ220Q.Seq.d/                        803   0.0
SSI642 (SSI642Q) /CSM/SS/SSI6-B/SSI642Q.Seq.d/                        803   0.0
SSI186 (SSI186Q) /CSM/SS/SSI1-D/SSI186Q.Seq.d/                        803   0.0
SSH868 (SSH868Q) /CSM/SS/SSH8-C/SSH868Q.Seq.d/                        803   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U20997|U20997.1 Dictyostelium discoideum putative 25 kDa protein mRNA, partial cds.   630  0.0  3
AF340153|AF340153.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 (cadA) gene, complete cds.   466  0.0  3
U49650|U49650.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 DdCAD-1 (cadA) mRNA, complete cds.   730  0.0  1
AC022913|AC022913.3 Homo sapiens chromosome 11 clone RP11-746C14 map 11, WORKING DRAFT SEQUENCE, 14 unordered pieces.    40  0.28  5
BZ357365|BZ357365.1 SALK_130634.51.25.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_130634.51.25.x, DNA sequence.    46  0.38  1
AX356393|AX356393.1 Sequence 27 from Patent WO0181622.            36  0.85  2
AX345570|AX345570.1 Sequence 641 from Patent WO0200928.           36  0.85  2
AX281156|AX281156.1 Sequence 21 from Patent WO0177377.            36  0.85  2
AC124492|AC124492.4 Mus musculus chromosome 12 clone RP23-454I23, complete sequence.    46  0.85  6
AF076973|AF076973.1 Dictyostelium discoideum putative adhesion molecule CAD2 (cad2) mRNA, complete cds.    42  1.0  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54657) RecName: Full=Calcium-dependent cell adhesion molecule ...   251   5e-66
U20997_1(U20997|pid:none) Dictyostelium discoideum putative 25 k...   219   2e-56
AC116551_17(AC116551|pid:none) Dictyostelium discoideum chromoso...    87   1e-16
(A4YIG5) RecName: Full=Cysteinyl-tRNA synthetase;          EC=6....    34   1.4
BA000026_783(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    32   6.8
CP000155_2836(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    32   6.8
EU929888_1(EU929888|pid:none) Streptococcus agalactiae strain AB...    32   6.8
BA000026_784(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    32   8.9
CU207366_264(CU207366|pid:none) Gramella forsetii KT0803 complet...    32   8.9

 psg: 0.87  gvh: 0.28  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSI188 is cyt

>SSI188Z.Seq
----------AGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATT
GTCAACAAAGTTAATTCAACTGCTGGTTCATATGAAATGACCATTACTCCATACCAAGTT
GATAAGGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTACT
CCACCAGATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAACACATACACCATATGAC
TATGTTGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAACTGGCCAAGTTACAGTT
ATTAAAAAAGATGAGACATTCCCAAAGAATATGACTGTTACACAAGATGATATTTTATCT
TTCATCTTTAACTTAAACTCTGAAAAATAAAACAATATGTTTTTTTTTCTCTTTAAGAAA
ACTTTAAATAATAAAATTATGAATTTCAGAAATTAAAAAAAAAAA