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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI186
Library SS
(Link to library)
Clone ID SSI186
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16529-1
Original site URL
Representative seq. ID SSI186Z
(Link to Original site)
Representative DNA sequence 
>SSI186 (SSI186Q) /CSM/SS/SSI1-D/SSI186Q.Seq.d/
XXXXXXXXXXGTAAAATTCTTCTTTGGTAAAAACTGCACTGGTGAATCATTTGAATTACA
ACAAAGGTGAAACTGTAAGATTCAACAATGGTGATAAATGGAATGATAAATTCATGTCAT
GTTTGGTTGGTTCAAATGTTAGATGTAACATTTGGGAGCATAATGAAATTGATACTCCAA
CTCCAGGAAAATTCCAAGAATTGGCTCAAGGCAGTACAAACAATGATTTAACCTCAATAA
ATGGTCTTTCAAAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAA
TTGTCAACAAAGTTAATTCAACTGCTGGTTCATATGAAATGACCATTACTCCATACCAAG
TTGATAAGGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTA
CTCCACCAGATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAACACATACACCATATG
ACTATGTTGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAACTGGCCAAGTTACAG
TTATTAAAAAAGATGAGACATTCCCAAAGAATATGACTGTTACACAAGATGATAATACAT
CTTTCATCTTTAACTTAAACTCTGAAAAATAAAACAATATGTTTTTTTTTCTCTTTAAGA
AAACTTTAAATAATAAAATTATGAATTTCAGAAATTAAAAAAAAAAAAAAAAA
sequence update 1997.12.25
Translated Amino Acid sequence 
---*NSSLVKTALVNHLNYNKGETVRFNNGDKWNDKFMSCLVGSNVRCNIWEHNEIDTPT
PGKFQELAQGSTNNDLTSINGLSKFQVLPGAFQWAVDVKIVNKVNSTAGSYEMTITPYQV
DKVACKDGDDFVQLPIPKLTPPDSEIVSHLTVRQTHTPYDYVVNGSVYFKYSPTTGQVTV
IKKDETFPKNMTVTQDDNTSFIFNLNSEK*nnmffflfkktlnnkimnfrn*kkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---*NSSLVKTALVNHLNYNKGETVRFNNGDKWNDKFMSCLVGSNVRCNIWEHNEIDTPT
PGKFQELAQGSTNNDLTSINGLSKFQVLPGAFQWAVDVKIVNKVNSTAGSYEMTITPYQV
DKVACKDGDDFVQLPIPKLTPPDSEIVSHLTVRQTHTPYDYVVNGSVYFKYSPTTGQVTV
IKKDETFPKNMTVTQDDNTSFIFNLNSEK*nnmffflfkktlnnkimnfrn*kkkkk


Frame B:
---killw*klhw*ii*ittkvkl*dstmvingminschvwlvqmldvtfgsimklilql
qensknwlkavqtmi*pq*mvfqssksyqelfngqlmlklstkliqllvhmk*pllhtkl
irllakmvmtlfncqfqnllhqilkllai*qfvkhihhmtml*mevftlntpqqlaklql
lkkmrhsqri*llhkmiihlsslt*tlknkticfffslrkl*iikl*iseikkkkk


Frame C:
---kfffgknctgesfelqqr*nckiqqw**me**ihvmfgwfkc*m*hlga**n*ysns
rkiprigsrqykq*fnlnkwsfkvpsltrsfsmgs*c*ncqqs*fncwfi*ndhysips*
*gclqrw**lcsiansktystrf*nc*pfnsssntyti*lcckwkcll*ilpnnwpsysy
*kr*dipkeydcytr**yifhl*lkl*kikqyvffsl*enfk**nyefqklkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI186 (SSI186Q) /CSM/SS/SSI1-D/SSI186Q.Seq.d/                       1306   0.0
SSK494 (SSK494Q) /CSM/SS/SSK4-D/SSK494Q.Seq.d/                       1283   0.0
SSC587 (SSC587Q) /CSM/SS/SSC5-D/SSC587Q.Seq.d/                       1275   0.0
AHG682 (AHG682Q) /CSM/AH/AHG6-D/AHG682Q.Seq.d/                       1257   0.0
VHG542 (VHG542Q) /CSM/VH/VHG5-B/VHG542Q.Seq.d/                       1255   0.0
VHG402 (VHG402Q) /CSM/VH/VHG4-A/VHG402Q.Seq.d/                       1255   0.0
VFG405 (VFG405Q) /CSM/VF/VFG4-A/VFG405Q.Seq.d/                       1255   0.0
AHH433 (AHH433Q) /CSM/AH/AHH4-B/AHH433Q.Seq.d/                       1255   0.0
AHE127 (AHE127Q) /CSM/AH/AHE1-B/AHE127Q.Seq.d/                       1255   0.0
AHB807 (AHB807Q) /CSM/AH/AHB8-A/AHB807Q.Seq.d/                       1255   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U49650|U49650.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 DdCAD-1 (cadA) mRNA, complete cds.  1142  0.0  2
U20997|U20997.1 Dictyostelium discoideum putative 25 kDa protein mRNA, partial cds.  1011  0.0  4
AF340153|AF340153.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 (cadA) gene, complete cds.   628  0.0  5
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    40  0.15  6
AC111966|AC111966.4 Rattus norvegicus clone CH230-185O4, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    42  0.55  3
AG120353|AG120353.1 Pan troglodytes DNA, clone: PTB-129B05.F.     46  0.59  1
AC023526|AC023526.2 Homo sapiens clone RP11-587F19, WORKING DRAFT SEQUENCE, 52 unordered pieces.    46  0.59  1
BZ357365|BZ357365.1 SALK_130634.51.25.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_130634.51.25.x, DNA sequence.    46  0.59  1
AC097613|AC097613.6 Rattus norvegicus clone CH230-152C17, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38  0.98  4
AL096692|AL096692.1 Arabidopsis thaliana DNA *** SEQUENCING IN PROGRESS *** BAC clone  F17A13 (ESSAII project).    46  1.0  2
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54657) RecName: Full=Calcium-dependent cell adhesion molecule ...   398   e-114
U20997_1(U20997|pid:none) Dictyostelium discoideum putative 25 k...   359   e-102
AC116551_17(AC116551|pid:none) Dictyostelium discoideum chromoso...    98   2e-19
AJ575138_1(AJ575138|pid:none) Sordaria macrospora app gene for a...    58   3e-07
BX571864_113(BX571864|pid:none) Photorhabdus luminescens subsp. ...    54   4e-06
(A4YIG5) RecName: Full=Cysteinyl-tRNA synthetase;          EC=6....    34   3.8
CU207366_3569(CU207366|pid:none) Gramella forsetii KT0803 comple...    34   4.9
BA000026_784(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    33   6.5
CP000685_4711(CP000685|pid:none) Flavobacterium johnsoniae UW101...    33   8.4
protein update 2009. 2. 1
PSORT 

 psg: 0.74  gvh: 0.46  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SSI186 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI186Z
3' end seq. 
>SSI186Z.Seq
----------GTAAAATTCTTCTTTGGTAAAAACTGCACTGGTGAATCATTTGAATTACA
ACAAAGGTGAAACTGTAAGATTCAACAATGGTGATAAATGGAATGATAAATTCATGTCAT
GTTTGGTTGGTTCAAATGTTAGATGTAACATTTGGGAGCATAATGAAATTGATACTCCAA
CTCCAGGAAAATTCCAAGAATTGGCTCAAGGCAGTACAAACAATGATTTAACCTCAATAA
ATGGTCTTTCAAAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAA
TTGTCAACAAAGTTAATTCAACTGCTGGTTCATATGAAATGACCATTACTCCATACCAAG
TTGATAAGGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTA
CTCCACCAGATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAACACATACACCATATG
ACTATGTTGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAACTGGCCAAGTTACAG
TTATTAAAAAAGATGAGACATTCCCAAAGAATATGACTGTTACACAAGATGATAATACAT
CTTTCATCTTTAACTTAAACTCTGAAAAATAAAACAATATGTTTTTTTTTCTCTTTAAGA
AAACTTTAAATAATAAAATTATGAATTTCAGAAATTAAAAAAAAAAAAAAAAA
Length of 3' end seq. 703
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -