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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI184
Library SS
(Link to library)
Clone ID SSI184
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U05419-1
Original site URL
Representative seq. ID SSI184E
(Link to Original site)
Representative DNA sequence 
>SSI184 (SSI184Q) /CSM/SS/SSI1-D/SSI184Q.Seq.d/
ATAAAATCAAAAATTAAATTAAATAATGGTATTGAAATGCCATTATTTGGTATTGGTACA
TATCAAATTAAATCAATTGATATGGAAAGAGTTTTAAGAGAAGCAATAATTGATAATGGA
TATATTTTAATTGATACAGCTTCATCTTATAGACAAGAGGAAGCGATTGGTGATTGTTTA
AAAAAGATATTTGAAGAAGGTAAAATAAAGAGAGAAGATTTATTTATTACTACGAAATCA
AGTACAAGTGAACATGGTTATGATAAAGCAATTGAAGCATGTAATAACTCTTTAAAGAGA
TTACAATTGGATTACGTTGATCTTTATTTAATTCATTGGCCTGGTCAAGCTGGTAATCAG
CCTTCTTCACCAAAGAATTCAGAAGCTCGTGCTGAAACTTGGAAAGCATTTCAACAATTA
TTAAAAAAGTACGTTCAATTGGTGTTTCAAATTATACAATCAATCATTTAACTGAACTTT
TATCATCACCAAATTTACAAATTAAACCAGCTGTAAATCAAGTTGAATTTCATCCATTCT
TATATCAAAAAGATTTATTTGAATTTTGTAAAAAAAAAATCATATAATTTTAGAAGCTTA
TTCTTCATTAACTCGTGGTGAAAAATTAAATGATGATCTTATTGTAGAATATGCAAAATC
TTTAGGTAAAACTAGAGCACAATTAATGCTTCGTTGGGCATTACAAAAAGGTATTGTAGT
TATACCAAAATCAACAAACTCGGAAAGAATTAAAGAAAATTGTTCATTATATGATTTTGA
AATTCCAAATGAAATTATGGAAAAATTAGATTCTATGGGCAATGAAAAAAGAATTTGTTG
GGATCCAACTGTAGTTCTTTAAAAAAAAATAAAATAAAAAAACAAGTAAAAAAAAGAAAT
AAAGAATTTTTTAAATTTAAAAAAAAAAAAAA
sequence update 1999. 4. 9
Translated Amino Acid sequence 
IKSKIKLNNGIEMPLFGIGTYQIKSIDMERVLREAIIDNGYILIDTASSYRQEEAIGDCL
KKIFEEGKIKREDLFITTKSSTSEHGYDKAIEACNNSLKRLQLDYVDLYLIHWPGQAGNQ
PSSPKNSEARAETWKAFQQLLKKYVQLVFQIIQSII*lnfyhhqiyklnql*iklnfihs
yikkiylnfvkkksynfrslffinsw*kik**sycrickifr*n*stinaslgitkrycs
ytkinklgkn*rklfii*f*nsk*nygkirfygq*kknllgsncsslkknkikkqvkkrn
keffkfkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
IKSKIKLNNGIEMPLFGIGTYQIKSIDMERVLREAIIDNGYILIDTASSYRQEEAIGDCL
KKIFEEGKIKREDLFITTKSSTSEHGYDKAIEACNNSLKRLQLDYVDLYLIHWPGQAGNQ
PSSPKNSEARAETWKAFQQLLKKYVQLVFQIIQSII*lnfyhhqiyklnql*iklnfihs
yikkiylnfvkkksynfrslffinsw*kik**sycrickifr*n*stinaslgitkrycs
ytkinklgkn*rklfii*f*nsk*nygkirfygq*kknllgsncsslkknkikkqvkkrn
keffkfkkkk


Frame B:
*nqkln*imvlkchylvlvhiklnqliwkef*ekq*limdif*liqlhlidkrkrlviv*
krylkkvk*rekiylllrnqvqvnmvmikqlkhvitl*rdynwitlifi*figlvklvis
llhqriqklvlklgkhfnny*kstfnwcfklynqsfn*tfiitkftn*tsckss*issil
iskrfi*il*kknhiileayssltrgeklnddliveyakslgktraqlmlrwalqkgivv
ipkstnserikencslydfeipneimekldsmgnekricwdptvvl*kkik*knk*kkei
knflnlkkkk


Frame C:
kikn*ik*wy*naiiwywyisn*in*ygksfkrsnn**wiyfn*ysfil*trgsdw*lfk
kdi*rr*nkerrfiyyyeikyk*twl**sn*sm**lfkeitiglr*slfnslawssw*sa
fftkefrssc*nlesistiikkvrsigvsnytinhltellsspnlqikpavnqvefhpfl
yqkdlfefckkkii*f*klilh*lvvkn*mmill*nmqnl*vklehn*cfvghykkvl*l
yqnqqtrkelkkivhymilkfqmklwkn*ilwamkkefvgiql*ffkkk*nkktskkkk*
rif*i*kkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI184 (SSI184Q) /CSM/SS/SSI1-D/SSI184Q.Seq.d/                       1643   0.0
SLE432 (SLE432Q) /CSM/SL/SLE4-B/SLE432Q.Seq.d/                         74   4e-12
VSK165 (VSK165Q) /CSM/VS/VSK1-C/VSK165Q.Seq.d/                         56   1e-06
VSJ787 (VSJ787Q) /CSM/VS/VSJ7-D/VSJ787Q.Seq.d/                         56   1e-06
VSJ505 (VSJ505Q) /CSM/VS/VSJ5-A/VSJ505Q.Seq.d/                         56   1e-06
VSJ335 (VSJ335Q) /CSM/VS/VSJ3-B/VSJ335Q.Seq.d/                         56   1e-06
VSI717 (VSI717Q) /CSM/VS/VSI7-A/VSI717Q.Seq.d/                         56   1e-06
VSI506 (VSI506Q) /CSM/VS/VSI5-A/VSI506Q.Seq.d/                         56   1e-06
VSI169 (VSI169Q) /CSM/VS/VSI1-C/VSI169Q.Seq.d/                         56   1e-06
VSH312 (VSH312Q) /CSM/VS/VSH3-A/VSH312Q.Seq.d/                         56   1e-06
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AI574520|AI574520.1 BSBmL3SZ14P17SK Brugia malayi infective larva cDNA (SAW94WL-BmL3) Brugia malayi cDNA clone BSBmL3SZ14P17SK 5', mRNA sequence.    46  5e-07  3
AI508093|AI508093.1 BSBmL3SZ08C24SK Brugia malayi infective larva cDNA (SAW94WL-BmL3) Brugia malayi cDNA clone BSBmL3SZ08C24SK 5', mRNA sequence.    46  5e-07  3
AI546777|AI546777.1 BSBmL3SZ12L24SK Brugia malayi infective larva cDNA (SAW94WL-BmL3) Brugia malayi cDNA clone BSBmL3SZ12L24SK 5', mRNA sequence.    46  5e-07  3
AI508101|AI508101.1 BSBmL3SZ08G21SK Brugia malayi infective larva cDNA (SAW94WL-BmL3) Brugia malayi cDNA clone BSBmL3SZ08G21SK 5', mRNA sequence.    46  5e-07  3
AI508131|AI508131.1 BSBmL3SZ09E18SK Brugia malayi infective larva cDNA (SAW94WL-BmL3) Brugia malayi cDNA clone BSBmL3SZ09E18SK 5', mRNA sequence.    46  5e-07  3
AI783182|AI783182.1 BSBmL3SZ15H9SK Brugia malayi infective larva cDNA (SAW94WL-BmL3) Brugia malayi cDNA clone BSBmL3SZ15H9SK 5', mRNA sequence.    46  5e-07  3
AI944383|AI944383.1 KJBmL3SZ4J1SK Brugia malayi infective larva cDNA (SAW94WL-BmL3) Brugia malayi cDNA clone KJBmL3SZ4J1SK 5', mRNA sequence.    46  7e-07  3
AW561872|AW561872.1 KJBmL3SZ46M23SK Brugia malayi infective larva cDNA (SAW94WL-BmL3) Brugia malayi cDNA clone KJBmL3SZ46M23SK 5', mRNA sequence.    46  1e-06  3
AI944352|AI944352.1 KJBmL3SZ4B20SK Brugia malayi infective larva cDNA (SAW94WL-BmL3) Brugia malayi cDNA clone KJBmL3SZ4B20SK 5', mRNA sequence.    46  1e-06  3
CF099375|CF099375.1 rd71h01.y2 Meloidogyne incognita parasitic adult female SL1 TOPO v1 Meloidogyne incognita cDNA 5' similar to TR:Q18483 Q18483 SIMILAR TO ALDOSE REDUCTASES. [1] ;, mRNA sequence.    38  3e-06  4
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000813_2958(CP000813|pid:none) Bacillus pumilus SAFR-032, comp...   119   3e-53
CP000728_965(CP000728|pid:none) Clostridium botulinum F str. Lan...   111   2e-50
CP000962_1043(CP000962|pid:none) Clostridium botulinum A3 str. L...   112   6e-50
CP000939_983(CP000939|pid:none) Clostridium botulinum B1 str. Ok...   109   7e-50
AB074119_1(AB074119|pid:none) Bacillus subtilis yvgN gene for be...   113   1e-49
CP000348_166(CP000348|pid:none) Leptospira borgpetersenii serova...    97   2e-49
BT083110_1(BT083110|pid:none) Anoplopoma fimbria clone afim-evh-...   113   2e-49
CP000251_2020(CP000251|pid:none) Anaeromyxobacter dehalogenans 2...   111   2e-49
CP001581_1037(CP001581|pid:none) Clostridium botulinum A2 str. K...   110   5e-49
AM412317_982(AM412317|pid:none) Clostridium botulinum A str. ATC...   108   8e-49
protein update 2009. 7. 8
PSORT 

 psg: 0.67  gvh: 0.32  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSI184 is nuc
5' end seq. ID SSI184F
5' end seq. 
>SSI184F.Seq
ATAAAATCAAAAATTAAATTAAATAATGGTATTGAAATGCCATTATTTGGTATTGGTACA
TATCAAATTAAATCAATTGATATGGAAAGAGTTTTAAGAGAAGCAATAATTGATAATGGA
TATATTTTAATTGATACAGCTTCATCTTATAGACAAGAGGAAGCGATTGGTGATTGTTTA
AAAAAGATATTTGAAGAAGGTAAAATAAAGAGAGAAGATTTATTTATTACTACGAAATCA
AGTACAAGTGAACATGGTTATGATAAAGCAATTGAAGCATGTAATAACTCTTTAAAGAGA
TTACAATTGGATTACGTTGATCTTTATTTAATTCATTGGCCTGGTCAAGCTGGTAATCAG
CCTTCTTCACCAAAGAATTCAGAAGCTCGTGCTGAAACTTGGAAAGCATTTCAACAATTA
TACAAAGATAAAAAAGTACGTTCAATTGGTGTTTCAAATTATACAATCAATCATTTAACT
GAACTTTTATCATCACCAAATTTACAAATTAAACCAGCTGTAAATCAAGTTGAATTTCAT
CCATTCTTATATCAAAAAGATTTATTTGAATTTTGTAA----------
Length of 5' end seq. 578
3' end seq. ID SSI184Z
3' end seq. 
>SSI184Z.Seq
----------TAAAAAAGTACGTTCAATTGGTGTTTCAAATTATACAATCAATCATTTAA
CTGAACTTTTATCATCACCAAATTTACAAATTAAACCAGCTGTAAATCAAGTTGAATTTC
ATCCATTCTTATATCAAAAAGATTTATTTGAATTTTGTAAAAAAAATCATATAATTTTAG
AAGCTTATTCTTCATTAACTCGTGGTGAAAAATTAAATGATGATCTTATTGTAGAATATG
CAAAATCTTTAGGTAAAACTAGAGCACAATTAATGCTTCGTTGGGCATTACAAAAAGGTA
TTGTAGTTATACCAAAATCAACAAACTCGGAAAGAATTAAAGAAAATTGTTCATTATATG
ATTTTGAAATTCCAAATGAAATTATGGAAAAATTAGATTCTATGGGCAATGAAAAAAGAA
TTTGTTGGGATCCAACTGTAGTTCTTTAAAAAAAAATAAAATAAAAAAACAAGTAAAAAA
AAGAAATAAAGAATTTTTTAAATTTAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 517
Connected seq. ID SSI184P
Connected seq. 
>SSI184P.Seq
ATAAAATCAAAAATTAAATTAAATAATGGTATTGAAATGCCATTATTTGGTATTGGTACA
TATCAAATTAAATCAATTGATATGGAAAGAGTTTTAAGAGAAGCAATAATTGATAATGGA
TATATTTTAATTGATACAGCTTCATCTTATAGACAAGAGGAAGCGATTGGTGATTGTTTA
AAAAAGATATTTGAAGAAGGTAAAATAAAGAGAGAAGATTTATTTATTACTACGAAATCA
AGTACAAGTGAACATGGTTATGATAAAGCAATTGAAGCATGTAATAACTCTTTAAAGAGA
TTACAATTGGATTACGTTGATCTTTATTTAATTCATTGGCCTGGTCAAGCTGGTAATCAG
CCTTCTTCACCAAAGAATTCAGAAGCTCGTGCTGAAACTTGGAAAGCATTTCAACAATTA
TACAAAGATAAAAAAGTACGTTCAATTGGTGTTTCAAATTATACAATCAATCATTTAACT
GAACTTTTATCATCACCAAATTTACAAATTAAACCAGCTGTAAATCAAGTTGAATTTCAT
CCATTCTTATATCAAAAAGATTTATTTGAATTTTGTAA----------TAAAAAAGTACG
TTCAATTGGTGTTTCAAATTATACAATCAATCATTTAACTGAACTTTTATCATCACCAAA
TTTACAAATTAAACCAGCTGTAAATCAAGTTGAATTTCATCCATTCTTATATCAAAAAGA
TTTATTTGAATTTTGTAAAAAAAATCATATAATTTTAGAAGCTTATTCTTCATTAACTCG
TGGTGAAAAATTAAATGATGATCTTATTGTAGAATATGCAAAATCTTTAGGTAAAACTAG
AGCACAATTAATGCTTCGTTGGGCATTACAAAAAGGTATTGTAGTTATACCAAAATCAAC
AAACTCGGAAAGAATTAAAGAAAATTGTTCATTATATGATTTTGAAATTCCAAATGAAAT
TATGGAAAAATTAGATTCTATGGGCAATGAAAAAAGAATTTGTTGGGATCCAACTGTAGT
TCTTTAAAAAAAAATAAAATAAAAAAACAAGTAAAAAAAAGAAATAAAGAATTTTTTAAA
TTTAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 1095
Full length Seq ID SSI184E
Full length Seq. 
>SSI184E.Seq
ATAAAATCAAAAATTAAATTAAATAATGGTATTGAAATGCCATTATTTGGTATTGGTACA
TATCAAATTAAATCAATTGATATGGAAAGAGTTTTAAGAGAAGCAATAATTGATAATGGA
TATATTTTAATTGATACAGCTTCATCTTATAGACAAGAGGAAGCGATTGGTGATTGTTTA
AAAAAGATATTTGAAGAAGGTAAAATAAAGAGAGAAGATTTATTTATTACTACGAAATCA
AGTACAAGTGAACATGGTTATGATAAAGCAATTGAAGCATGTAATAACTCTTTAAAGAGA
TTACAATTGGATTACGTTGATCTTTATTTAATTCATTGGCCTGGTCAAGCTGGTAATCAG
CCTTCTTCACCAAAGAATTCAGAAGCTCGTGCTGAAACTTGGAAAGCATTTCAACAATTA
TTAAAAAAGTACGTTCAATTGGTGTTTCAAATTATACAATCAATCATTTAACTGAACTTT
TATCATCACCAAATTTACAAATTAAACCAGCTGTAAATCAAGTTGAATTTCATCCATTCT
TATATCAAAAAGATTTATTTGAATTTTGTAAAAAAAAAATCATATAATTTTAGAAGCTTA
TTCTTCATTAACTCGTGGTGAAAAATTAAATGATGATCTTATTGTAGAATATGCAAAATC
TTTAGGTAAAACTAGAGCACAATTAATGCTTCGTTGGGCATTACAAAAAGGTATTGTAGT
TATACCAAAATCAACAAACTCGGAAAGAATTAAAGAAAATTGTTCATTATATGATTTTGA
AATTCCAAATGAAATTATGGAAAAATTAGATTCTATGGGCAATGAAAAAAGAATTTGTTG
GGATCCAACTGTAGTTCTTTAAAAAAAAATAAAATAAAAAAACAAGTAAAAAAAAGAAAT
AAAGAATTTTTTAAATTTAAAAAAAAAAAAAA
Length of full length seq. 932