>SSI181 (SSI181Q) /CSM/SS/SSI1-D/SSI181Q.Seq.d/
XXXXXXXXXXGGGTAAATGGTATGAAATTGCACGTTTATACACATATTTTGAAAAGGATT
TGGATAAAATTACAGCTGAATATTCAATTAATAAAGATGGTTCAATAACAGTGGTTAATA
GTGGATACAATTATAAAAAGAAAAAGAGAGAAAATGCAAAAGGTATTGCTTATTTTGTAA
ATGGCTCGGACGAAGGAATGCTAAAAGTCTCTTTCTTTGGTCCATTTTATTCTGGCTACA
ATGTAATTGCAATTGATCCTGACTATAAATATGCTTTAATTGCTGGTCAAAGTTTTGATT
ACATGTGGATCCTTTCAAAAGAACCAACAATTCCAGAGAAAATTAAAAATTCTTATTTAG
AATTAGCAAAATCAGTTGGTTATGATATTACAAAATTAATTTGGTCAAAACAAAATGAAA
ATGAAAATTAAAAATTAAAAATTAAAAATTAAAATTTAAAATTTTATTTTTATTTTTATA
AAATTAAATTTAAAGATTTAATTTTTTCTTCAATTTCTAAAACCAAATTAATACCAATAT
CTAATAAATCTTGATTAGTTGATTCAATTAATAAAAAAAAAAAAAAAAAAAAA

---GKWYEIARLYTYFEKDLDKITAEYSINKDGSITVVNSGYNYKKKKRENAKGIAYFVN
GSDEGMLKVSFFGPFYSGYNVIAIDPDYKYALIAGQSFDYMWILSKEPTIPEKIKNSYLE
LAKSVGYDITKLIWSKQNENEN*klkikn*nlkfyfyfykikfkdlifssisktklipis
nks*lvdsinkkkkkkk

Frame A:
---GKWYEIARLYTYFEKDLDKITAEYSINKDGSITVVNSGYNYKKKKRENAKGIAYFVN
GSDEGMLKVSFFGPFYSGYNVIAIDPDYKYALIAGQSFDYMWILSKEPTIPEKIKNSYLE
LAKSVGYDITKLIWSKQNENEN*klkikn*nlkfyfyfykikfkdlifssisktklipis
nks*lvdsinkkkkkkk


Frame B:
---vngmklhvythilkriwiklqlniqlikmvq*qwlivdtiikrkrekmqkvllil*m
artkec*kslslvhfilatm*lqliltinml*llvkvlitcgsfqknqqfqrklkili*n
*qnqlvmilqn*fgqnkmkmkikn*klkiki*nfififiklnlki*fflqflkpn*yqyl
inld*liqlikkkkkk


Frame C:
---*mv*nctfihif*kgfg*nys*ifn**rwfnnsg**wiql*kekerkckryclfckw
lgrrnakslflwsilfwlqcncn*s*l*icfncwskf*lhvdpfkrtnnsren*kflfri
skiswl*yykinlvktk*k*klkikn*klkfkilflfl*n*i*rfnfffnf*nqintni*
*ilis*fn**kkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM110 (SSM110Q) /CSM/SS/SSM1-A/SSM110Q.Seq.d/                        454   e-127
SSI181 (SSI181Q) /CSM/SS/SSI1-D/SSI181Q.Seq.d/                        454   e-127
SSH207 (SSH207Q) /CSM/SS/SSH2-A/SSH207Q.Seq.d/                        454   e-127
SSG648 (SSG648Q) /CSM/SS/SSG6-B/SSG648Q.Seq.d/                        454   e-127
SSA392 (SSA392Q) /CSM/SS/SSA3-D/SSA392Q.Seq.d/                        454   e-127
SSA142 (SSA142Q) /CSM/SS/SSA1-B/SSA142Q.Seq.d/                        454   e-127
SSL885 (SSL885Q) /CSM/SS/SSL8-D/SSL885Q.Seq.d/                        430   e-119
SSH673 (SSH673Q) /CSM/SS/SSH6-D/SSH673Q.Seq.d/                        174   1e-42
SLD807 (SLD807Q) /CSM/SL/SLD8-A/SLD807Q.Seq.d/                        157   2e-37
SSI267 (SSI267Q) /CSM/SS/SSI2-C/SSI267Q.Seq.d/                        103   3e-21

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BH388415|BH388415.1 AG-ND-144N13.TF ND-TAM Anopheles gambiae genomic clone AG-ND-144N13 , DNA sequence.    42  0.002  2
CC281358|CC281358.1 CH261-167E17_RM1.1 CH261 Gallus gallus genomic clone CH261-167E17, DNA sequence.    38  0.54  2
BX005067|BX005067.6 Zebrafish DNA sequence from clone CH211-182K2 in linkage group 24.    38  1.5  5
AC124881|AC124881.4 Rattus norvegicus clone CH230-39D24, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    36  1.7  4
AC145110|AC145110.1 Homo sapiens chromosome 8 clone XXfos-80720H9 map 8, WORKING DRAFT SEQUENCE, 3 unordered pieces.    44  1.9  1
CC149914|CC149914.1 NDL.40P4.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NotreDame Liverpool-40P4, DNA sequence.    44  1.9  1
AC103493|AC103493.7 Rattus norvegicus clone CH230-31C2, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44  1.9  1
AX144817|AX144817.1 Sequence 3539 from Patent WO0134809.          44  1.9  1
CC127890|CC127890.1 NDL.31O6.T7 Notre Dame Liverpool Aedes aegypti genomic clone NDL.31O6, DNA sequence.    44  1.9  1
AF269497|AF269497.1 Staphylococcus epidermidis strain SR1 clone step.1006c02 genomic sequence.    44  1.9  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000685_2124(CP000685|pid:none) Flavobacterium johnsoniae UW101...   176   3e-43
CP000964_4805(CP000964|pid:none) Klebsiella pneumoniae 342, comp...   157   2e-37
CP000647_4660(CP000647|pid:none) Klebsiella pneumoniae subsp. pn...   157   2e-37
CP000653_65(CP000653|pid:none) Enterobacter sp. 638, complete ge...   155   8e-37
CP000937_646(CP000937|pid:none) Francisella philomiragia subsp. ...   153   4e-36
AE014613_4097(AE014613|pid:none) Salmonella enterica subsp. ente...   152   5e-36
AE006468_4199(AE006468|pid:none) Salmonella enterica subsp. ente...   152   6e-36
CP000880_3173(CP000880|pid:none) Salmonella enterica subsp. ariz...   151   1e-35
AM933172_4078(AM933172|pid:none) Salmonella enterica subsp. ente...   151   1e-35
AB365867_2(AB365867|pid:none) Salmonella enterica subsp. enteric...   150   3e-35

 psg: 0.55  gvh: 0.32  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSI181 is nuc

>SSI181Z.Seq
----------GGGTAAATGGTATGAAATTGCACGTTTATACACATATTTTGAAAAGGATT
TGGATAAAATTACAGCTGAATATTCAATTAATAAAGATGGTTCAATAACAGTGGTTAATA
GTGGATACAATTATAAAAAGAAAAAGAGAGAAAATGCAAAAGGTATTGCTTATTTTGTAA
ATGGCTCGGACGAAGGAATGCTAAAAGTCTCTTTCTTTGGTCCATTTTATTCTGGCTACA
ATGTAATTGCAATTGATCCTGACTATAAATATGCTTTAATTGCTGGTCAAAGTTTTGATT
ACATGTGGATCCTTTCAAAAGAACCAACAATTCCAGAGAAAATTAAAAATTCTTATTTAG
AATTAGCAAAATCAGTTGGTTATGATATTACAAAATTAATTTGGTCAAAACAAAATGAAA
ATGAAAATTAAAAATTAAAAATTAAAAATTAAAATTTAAAATTTTATTTTTATTTTTATA
AAATTAAATTTAAAGATTTAATTTTTTCTTCAATTTCTAAAACCAAATTAATACCAATAT
CTAATAAATCTTGATTAGTTGATTCAATTAATAAAAAAAAAAAAAAAAAAAAA