>SSI173 (SSI173Q) /CSM/SS/SSI1-D/SSI173Q.Seq.d/
AACAACCATTAAAAAAACAACCACAACAACTACAACCACTTATCCTACTCTTACTCAAAA
AAGAGTTACAAGAGGTAATAGTCTTATTAATTTCAAACCTGGAAGGAGTGAAAGTTCATT
TTATAGTGACTTGGCAAAACAACCTTTTAAAGATAATCACTAAAAACAACAACAACAACA
ACAAAACAAAAACTCAACAACTACACAAATACAATTATATATAATAATAATAGTTGTACA
ATTTTGTGTTACTGTTGCATTTTAAAAAAATAAAATAAAAATAAAAATAAAAATGATGTC
ATTTTCCCAGGGATTAACCACAAAAAAAAAAAAAAXXXXXXXXXX

QPLKKQPQQLQPLILLLLKKELQEVIVLLISNLEGVKVHFIVTWQNNLLKIITKNNNNNN
KTKTQQLHKYNYI****lynfvlllhfkkik*k*k*k*chfprd*pqkkk---

Frame A:
nnh*knnhnnynhlsysyskksykr**sy*fqtwke*kfil**lgkttf*r*slkttttt
tkqklnnytntiiynnnsctilcyccilkk*nknknkndvifpginhkkkk---


Frame B:
ttikkttttttttyptltqkrvtrgnslinfkpgrsessfysdlakqpfkdnh*kqqqqq
qnknstttqiqlyiiiivvqfcvtvaf*knkikikikmmsfsqglttkkkk---


Frame C:
QPLKKQPQQLQPLILLLLKKELQEVIVLLISNLEGVKVHFIVTWQNNLLKIITKNNNNNN
KTKTQQLHKYNYI****lynfvlllhfkkik*k*k*k*chfprd*pqkkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI173 (SSI173Q) /CSM/SS/SSI1-D/SSI173Q.Seq.d/                        285   2e-76
VSA109 (VSA109Q) /CSM/VS/VSA1-A/VSA109Q.Seq.d/                         44   0.001
CHE210 (CHE210Q) /CSM/CH/CHE2-A/CHE210Q.Seq.d/                         44   0.001
CHD556 (CHD556Q) /CSM/CH/CHD5-C/CHD556Q.Seq.d/                         44   0.001
VFO634 (VFO634Q) /CSM/VF/VFO6-B/VFO634Q.Seq.d/                         42   0.005
SSL720 (SSL720Q) /CSM/SS/SSL7-A/SSL720Q.Seq.d/                         40   0.021
SSA445 (SSA445Q) /CSM/SS/SSA4-B/SSA445Q.Seq.d/                         40   0.021
AFN885 (AFN885Q) /CSM/AF/AFN8-D/AFN885Q.Seq.d/                         40   0.021
AFD763 (AFD763Q) /CSM/AF/AFD7-C/AFD763Q.Seq.d/                         40   0.021
VFE882 (VFE882Q) /CSM/VF/VFE8-D/VFE882Q.Seq.d/                         38   0.084

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC009870|AC009870.3 Homo sapiens clone RP11-219J10, WORKING DRAFT SEQUENCE, 19 unordered pieces.    48  0.070  1
AL606833|AL606833.8 Human DNA sequence from clone RP11-647M7 on chromosome X.    48  0.070  1
BZ060766|BZ060766.1 lkg39d07.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    34  0.34  3
AC104620|AC104620.5 Homo sapiens BAC clone RP11-294O2 from 4, complete sequence.    42  0.51  3
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    38  0.66  3
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36  0.83  5
AR279261|AR279261.1 Sequence 4 from patent US 6514697.            44  1.1  1
AR097042|AR097042.1 Sequence 4 from patent US 6071518.            44  1.1  1
AC120234|AC120234.3 Rattus norvegicus clone CH230-31F17, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces.    44  1.1  1
AF068065|AF068065.1 Cryptosporidium parvum GP900 gene, complete cds.    44  1.1  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 237,684,044

 psg: 0.89  gvh: 0.41  alm: 0.33  top: 0.33  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SSI173 is cyt

>SSI173F.Seq
AACAACCATTAAAAAAACAACCACAACAACTACAACCACTTATCCTACTCTTACTCAAAA
AAGAGTTACAAGAGGTAATAGTCTTATTAATTTCAAACCTGGAAGGAGTGAAAGTTCATT
TTATAGTGACTTGGCAAAACAACCTTTTAAAGATAATCACTAAAAACAACAACAACAACA
ACAAAACAAAAACTCAACAACTACACAAATACAATTATATATAATAATAATAGTTGTACA
ATTTTGTGTTACTGTTGCATTTTAAAAAAATAAAATAAAAATAAAAATAAAAATGATGTC
ATTTTCCCAGGGATTAACCACAAAAAAAAAAAAAA