>SSI169 (SSI169Q) /CSM/SS/SSI1-C/SSI169Q.Seq.d/
ATAAAAAAAAAAAAAAAAAAACAACCAAAATATTATATTATTTTTTGTAAATATAAATTA
AAAAAATGAAATTCCAACATACATTTATTGCATTATTATCACTATTAACATATGCAAATG
CATATGATTATTTCACAACAACATTGGCCAATCAAAATCCAGTTTGTGCTTCAGTAGATG
TCATACAAAATGTTTGTACTGAGGTTTGTGGTAGATTTGTCCGTTACATTCCTGATGCTA
CCAATACAAATCAATTCACTTTTGCCGAATATACTACAAACCAATGTACTGTTCAAGTAA
CACCAGCTGTAACAAATACATTTACTTGCGCTGATCAAACTTCTTCACATGCACTCGGTT
CTGATTGGAGTGGAGTTTGTAAAATCACTGCCACACCCGCACCAACAGTTACACCAACAG
TTACACCAACAGTTACACCAACAGTAACACCAACACCAACAAATACACCAAATCCAACCC
CATCCCAAACATCAACAACAACTGGTTCTGCTTCAACTGTTGTTGCAAGTTTATCACTCA
TTATTTTCTCAATGATTCTTTCCXXXXXXXXXX

kkkkkkttkilyyfl*i*IKKMKFQHTFIALLSLLTYANAYDYFTTTLANQNPVCASVDV
IQNVCTEVCGRFVRYIPDATNTNQFTFAEYTTNQCTVQVTPAVTNTFTCADQTSSHALGS
DWSGVCKITATPAPTVTPTVTPTVTPTVTPTPTNTPNPTPSQTSTTTGSASTVVASLSLI
IFSMIL---

Frame A:
ikkkkkkqpkyyiifckyklkk*nsnihllhyyhy*hmqmhmiisqqhwpikiqfvlq*m
sykmfvlrfvvdlsvtflmlpiqinsllpnilqtnvlfk*hql*qihllalikllhmhsv
ligvefvkslphphqqlhqqlhqqlhqq*hqhqqihqiqphpkhqqqlvllqlllqvyhs
lfsq*ff---


Frame B:
*kkkkknnqniilffvnin*kneiptyiyciiitinickci*lfhnnigqsksslcfsrc
htkcly*glw*icplhs*cyqyksihfcriyykpmycssntscnkyiylr*snfftctrf
*lewsl*nhchtrtnsytnsytnsytnsntntnkytksnpipninnnwfcfnccckfith
yflndsf---


Frame C:
kkkkkkttkilyyfl*i*IKKMKFQHTFIALLSLLTYANAYDYFTTTLANQNPVCASVDV
IQNVCTEVCGRFVRYIPDATNTNQFTFAEYTTNQCTVQVTPAVTNTFTCADQTSSHALGS
DWSGVCKITATPAPTVTPTVTPTVTPTVTPTPTNTPNPTPSQTSTTTGSASTVVASLSLI
IFSMIL---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI759 (SSI759Q) /CSM/SS/SSI7-C/SSI759Q.Seq.d/                       1033   0.0
SSI680 (SSI680Q) /CSM/SS/SSI6-D/SSI680Q.Seq.d/                       1033   0.0
SSI169 (SSI169Q) /CSM/SS/SSI1-C/SSI169Q.Seq.d/                       1033   0.0
SSC612 (SSC612Q) /CSM/SS/SSC6-A/SSC612Q.Seq.d/                       1033   0.0
SSC554 (SSC554Q) /CSM/SS/SSC5-C/SSC554Q.Seq.d/                       1033   0.0
SLG216 (SLG216Q) /CSM/SL/SLG2-A/SLG216Q.Seq.d/                       1033   0.0
CHS220 (CHS220Q) /CSM/CH/CHS2-A/CHS220Q.Seq.d/                       1033   0.0
CHL169 (CHL169Q) /CSM/CH/CHL1-C/CHL169Q.Seq.d/                       1033   0.0
CHG617 (CHG617Q) /CSM/CH/CHG6-A/CHG617Q.Seq.d/                       1033   0.0
CHL273 (CHL273Q) /CSM/CH/CHL2-D/CHL273Q.Seq.d/                       1031   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M20909|M20909.1 Dictyostelium discoideum cell surface glycoprotein PsA precursor (D19) gene, complete cds.   977  0.0  2
X15980|X15980.1 Dictyostelium discoideum D19 gene 5'-flanking region.   977  0.0  2
BD075065|BD075065.1 Expression of gonadotropin in Dictyostelium.   111  1e-20  1
A98322|A98322.1 Sequence 1 from Patent WO9913081.                111  1e-20  1
A21625|A21625.1 expression vector pMUW1630.                      105  6e-19  1
U20661|U20661.1 Dictyostelium discoideum unknown internal repeat protein gene, complete cds, and unknown orf1, orf2 and orf3 genes, partial cds.    66  3e-07  2
U16308|U16308.1 Caldocellum saccharolyticum endoglucanase/mannanase (celC) pseudogene, complete cds.    54  2e-04  2
AC116215|AC116215.5 Rattus norvegicus clone CH230-98H24, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    54  0.005  4
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    36  0.046  6
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38  0.046  8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54LC3) RecName: Full=Ponticulin-like protein C2; Flags: Precur...    53   5e-06
A98322_1(A98322|pid:none) Sequence 1 from Patent WO9913081.            41   0.025
(P36170) RecName: Full=Putative uncharacterized protein YKR102W;...    33   4.1
CP000441_1555(CP000441|pid:none) Burkholderia ambifaria AMMD chr...    32   9.0
CP001322_2279(CP001322|pid:none) Desulfatibacillum alkenivorans ...    32   9.0

 psg: 0.96  gvh: 0.78  alm: 0.26  top: 0.17  tms: 0.07  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 1.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for SSI169 is pla

>SSI169F.Seq
ATAAAAAAAAAAAAAAAAAAACAACCAAAATATTATATTATTTTTTGTAAATATAAATTA
AAAAAATGAAATTCCAACATACATTTATTGCATTATTATCACTATTAACATATGCAAATG
CATATGATTATTTCACAACAACATTGGCCAATCAAAATCCAGTTTGTGCTTCAGTAGATG
TCATACAAAATGTTTGTACTGAGGTTTGTGGTAGATTTGTCCGTTACATTCCTGATGCTA
CCAATACAAATCAATTCACTTTTGCCGAATATACTACAAACCAATGTACTGTTCAAGTAA
CACCAGCTGTAACAAATACATTTACTTGCGCTGATCAAACTTCTTCACATGCACTCGGTT
CTGATTGGAGTGGAGTTTGTAAAATCACTGCCACACCCGCACCAACAGTTACACCAACAG
TTACACCAACAGTTACACCAACAGTAACACCAACACCAACAAATACACCAAATCCAACCC
CATCCCAAACATCAACAACAACTGGTTCTGCTTCAACTGTTGTTGCAAGTTTATCACTCA
TTATTTTCTCAATGATTCTTTCC----------