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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI141
Library SS
(Link to library)
Clone ID SSI141
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12232-1
Original site URL
Representative seq. ID SSI141E
(Link to Original site)
Representative DNA sequence 
>SSI141 (SSI141Q) /CSM/SS/SSI1-B/SSI141Q.Seq.d/
CCCTCGAGGTCGACCCACGCGTCCGATTATATTTTTAATCCTAAAAAAAACCCAACAGTT
TTATTTAGAAACTCTTTTAAAACCTTAAAGTTTGAATTTTTTTTTTTTTTAAAAAAAAAT
CTCTTTTTTTATTTTTTTAAATTTTTATTTTTTCATATATTTTTTTTCAATTCTTTTTTT
TTTCGAATAAACACTCCAATTTATAAAAATATCATTTATCTGATATAACCTCGGCCGAAA
GAAATTACCAAAAAATGAGATTAATTGCTGCTCTTTTATCTGTATTATTAATAGCTTCAA
CTGCTCAATCAACTGTTACAATTTATGAAAGTTCAAAACCAGGTGATTTTGACTTTTATT
TATTTGTTCAACAATGGATTTATTCATACTGCGATTCACAAACTTGTATTCAAAATAAAG
AAAGAGAAGCATTCACTATCCATGGTTTATGGCCAGAGAATAGTGATGGCAGTTATCCAT
CATTCTGTTCAGGTCCATCATTCAATGTTAATGCTATCCAAGATTTAGAAGATCAATTAA
ACTTTGATTGGCCATCACTCACTGGTCCAAACACTGATTTCTGGACTCACGAATTCAGCA
AACATGGTACTTGTTCAATCACAGGTCCAATCACAGATATTCACGATTATTTCGCTACTG
GTATCAAACTTTACACCGAATTCAATATCACTGCTGCCCTCGAATCTGAAAATATTTATC
CATCAGATAGCAACACTTACAAACCAGTCGATATCACTAATGCTATCACCACTCATTTTG
GTGGTAAACCAGGTATTCAATGTTCATCTGGTCAATTATCAACTGTTGCTGTTTGTATCG
ATAAAAATAGTTTATCAATCATGGATTGTCCAGATCTCCAAGGTTGGAGTTGTTCTGGTA
GTGTTAAATTCCCAAGCACTGCTTAAAAATATTTAACAAAAACTATCATATAAAAAAAAA
AAAAAAAAAAAAAAAAATATTATATATATAGGTTTATTTAATAACATACCAATATATATA
ATATTTTAATGTGTGTTTAAACAAAAATTTCAAAAAAAAAAAA
sequence update 1998. 7.22
Translated Amino Acid sequence 
levdprvrlyf*s*kkpnsfi*klf*nlkv*iffffkkkslflff*ififsyiffqffff
snkhsnl*KYHLSDITSAERNYQKMRLIAALLSVLLIASTAQSTVTIYESSKPGDFDFYL
FVQQWIYSYCDSQTCIQNKEREAFTIHGLWPENSDGSYPSFCSGPSFNVNAIQDLEDQLN
FDWPSLTGPNTDFWTHEFSKHGTCSITGPITDIHDYFATGIKLYTEFNITAALESENIYP
SDSNTYKPVDITNAITTHFGGKPGIQCSSGQLSTVAVCIDKNSLSIMDCPDLQGWSCSGS
VKFPSTA*kyltktii*kkkkkkkkyyiyrfi**htniynilmcv*tkiskkk
Translated Amino Acid sequence (All Frames) 
Frame A:
psrsthasdyifnpkknptvlfrnsfktlkfefffflkknlffyffkflffhifffnsff
frintpiykniiyli*prpkeitkk*d*lllfylyy**lqllnqllqfmkvqnqviltfi
ylfnngfihtaihklvfkikkekhslsmvygqrivmavihhsvqvhhsmlmlski*kin*
tlighhslvqtlisgltnsanmvlvqsqvqsqiftiisllvsnftpnsisllpsnlkifi
hqiatltnqsislmlsplilvvnqvfnvhlvnyqlllfvsikivyqswivqiskvgvvlv
vlnsqallkni*qklsykkkkkkkkniiyiglfnnipiyiif*cvfkqkfqkkk


Frame B:
prgrptrpiiflilkktqqfyletllkp*slnffff*kkisffiflnfyffiyffsilff
fe*tlqfikisfi*ynlgrkklpkneinccsficiinsfncsincynl*kfktr*f*llf
icstmdlfilrftnlysk*rkrsihypwfmare**wqlsiilfrsiiqc*cyprfrrsik
l*laithwskh*fldsriqqtwylfnhrsnhrysrlfrywyqtlhriqyhccpri*kyls
ir*qhlqtsryh*cyhhsfww*trysmfiwsiinccclyr*k*finhglsrsprlelfw*
c*ipkhclkifnknyhikkkkkkkkilyi*vylityqyi*yfnvclnknfkkkk


Frame C:
levdprvrlyf*s*kkpnsfi*klf*nlkv*iffffkkkslflff*ififsyiffqffff
snkhsnl*KYHLSDITSAERNYQKMRLIAALLSVLLIASTAQSTVTIYESSKPGDFDFYL
FVQQWIYSYCDSQTCIQNKEREAFTIHGLWPENSDGSYPSFCSGPSFNVNAIQDLEDQLN
FDWPSLTGPNTDFWTHEFSKHGTCSITGPITDIHDYFATGIKLYTEFNITAALESENIYP
SDSNTYKPVDITNAITTHFGGKPGIQCSSGQLSTVAVCIDKNSLSIMDCPDLQGWSCSGS
VKFPSTA*kyltktii*kkkkkkkkyyiyrfi**htniynilmcv*tkiskkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI141 (SSI141Q) /CSM/SS/SSI1-B/SSI141Q.Seq.d/                       1522   0.0
VHB567 (VHB567Q) /CSM/VH/VHB5-C/VHB567Q.Seq.d/                       1415   0.0
VFI169 (VFI169Q) /CSM/VF/VFI1-C/VFI169Q.Seq.d/                       1237   0.0
SSA623 (SSA623Q) /CSM/SS/SSA6-A/SSA623Q.Seq.d/                       1221   0.0
VFH722 (VFH722Q) /CSM/VF/VFH7-A/VFH722Q.Seq.d/                       1199   0.0
VSA582 (VSA582Q) /CSM/VS/VSA5-D/VSA582Q.Seq.d/                       1120   0.0
VFL529 (VFL529Q) /CSM/VF/VFL5-B/VFL529Q.Seq.d/                       1116   0.0
SSF854 (SSF854Q) /CSM/SS/SSF8-C/SSF854Q.Seq.d/                       1088   0.0
VFL650 (VFL650Q) /CSM/VF/VFL6-C/VFL650Q.Seq.d/                       1057   0.0
VSC227 (VSC227Q) /CSM/VS/VSC2-B/VSC227Q.Seq.d/                       1047   0.0
own update 2002.12.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115680|AC115680.2 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.    62  7e-24  9
BG985734|BG985734.1 2720 NICHD Zebrafish normalized I Danio rerio cDNA clone 2720, mRNA sequence.    60  6e-05  1
AU030249|AU030249.1 Oryza sativa cDNA, partial sequence (E50815_2Z).    58  2e-04  1
AU030725|AU030725.1 Oryza sativa cDNA, partial sequence (E60155_2Z).    56  0.001  1
BG985755|BG985755.1 2900 NICHD Zebrafish normalized I Danio rerio cDNA clone 2900, mRNA sequence.    56  0.001  1
BG985810|BG985810.1 5137t3 NICHD Zebrafish normalized I Danio rerio cDNA clone 5001, mRNA sequence.    56  0.001  1
BG985748|BG985748.1 2838 NICHD Zebrafish normalized I Danio rerio cDNA clone 2838, mRNA sequence.    52  0.002  2
BG985758|BG985758.1 2915 NICHD Zebrafish normalized I Danio rerio cDNA clone 2915, mRNA sequence.    50  0.003  2
BG985744|BG985744.1 2808 NICHD Zebrafish normalized I Danio rerio cDNA clone 2808, mRNA sequence.    54  0.004  1
D46055|D46055.1 Rice cDNA, partial sequence (S10456_2A).    54  0.004  1
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q7M438) RecName: Full=Ribonuclease DdI;          Short=RNase Dd...   442   e-122
JE0316(JE0316;JE0407)protozoan RNase,DdI - slime mold (Dictyoste...   427   e-118
(P80022) RecName: Full=Extracellular ribonuclease LE;          S...   149   1e-34
U13256_1(U13256|pid:none) Nicotiana alata RNase NE mRNA, complet...   147   8e-34
S66342(S66342) ribonuclease II (EC 3.1.-.-) precursor, wound-ind...   145   2e-33
AC146971_5(AC146971|pid:none) Medicago truncatula clone mth2-128...   145   3e-33
JC5518(JC5518)ribonuclease M5 (EC 3.1.-.-) precursor, wound-indu...   144   4e-33
AB112028_1(AB112028|pid:none) Nicotiana glutinosa ngr1 gene for ...   144   4e-33
AB034638_1(AB034638|pid:none) Nicotiana tabacum mRNA for RNase, ...   144   5e-33
AB211503_1(AB211503|pid:none) Drosera adelae RNase DA-I mRNA for...   142   2e-32
protein update 2009. 7. 8
PSORT 

 psg: 0.75  gvh: 0.81  alm: 0.29  top: 0.33  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.59  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: Golgi
	 20.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SSI141 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSI141E
Full length Seq. 
>SSI141E.Seq
CCCTCGAGGTCGACCCACGCGTCCGATTATATTTTTAATCCTAAAAAAAACCCAACAGTT
TTATTTAGAAACTCTTTTAAAACCTTAAAGTTTGAATTTTTTTTTTTTTTAAAAAAAAAT
CTCTTTTTTTATTTTTTTAAATTTTTATTTTTTCATATATTTTTTTTCAATTCTTTTTTT
TTTCGAATAAACACTCCAATTTATAAAAATATCATTTATCTGATATAACCTCGGCCGAAA
GAAATTACCAAAAAATGAGATTAATTGCTGCTCTTTTATCTGTATTATTAATAGCTTCAA
CTGCTCAATCAACTGTTACAATTTATGAAAGTTCAAAACCAGGTGATTTTGACTTTTATT
TATTTGTTCAACAATGGATTTATTCATACTGCGATTCACAAACTTGTATTCAAAATAAAG
AAAGAGAAGCATTCACTATCCATGGTTTATGGCCAGAGAATAGTGATGGCAGTTATCCAT
CATTCTGTTCAGGTCCATCATTCAATGTTAATGCTATCCAAGATTTAGAAGATCAATTAA
ACTTTGATTGGCCATCACTCACTGGTCCAAACACTGATTTCTGGACTCACGAATTCAGCA
AACATGGTACTTGTTCAATCACAGGTCCAATCACAGATATTCACGATTATTTCGCTACTG
GTATCAAACTTTACACCGAATTCAATATCACTGCTGCCCTCGAATCTGAAAATATTTATC
CATCAGATAGCAACACTTACAAACCAGTCGATATCACTAATGCTATCACCACTCATTTTG
GTGGTAAACCAGGTATTCAATGTTCATCTGGTCAATTATCAACTGTTGCTGTTTGTATCG
ATAAAAATAGTTTATCAATCATGGATTGTCCAGATCTCCAAGGTTGGAGTTGTTCTGGTA
GTGTTAAATTCCCAAGCACTGCTTAAAAATATTTAACAAAAACTATCATATAAAAAAAAA
AAAAAAAAAAAAAAAAATATTATATATATAGGTTTATTTAATAACATACCAATATATATA
ATATTTTAATGTGTGTTTAAACAAAAATTTCAAAAAAAAAAAA
Length of full length seq. 1063