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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI138
Library SS
(Link to library)
Clone ID SSI138
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09427-1
Original site URL
Representative seq. ID SSI138P
(Link to Original site)
Representative DNA sequence 
>SSI138 (SSI138Q) /CSM/SS/SSI1-B/SSI138Q.Seq.d/
GTATGTTGATGTGGTTAGAGTTAATTTTTAATACACATAATTTAAATAATAAAGTAAATT
AATAATAATAATAATGATAATAGAAATATTATAACAATAAAATAGTAATAGTAACAGCAA
CAGCAAAAAAAAAGAAACAAATACAAACAGATACAAATAAATTAAATAAATAAATTGTGT
GTATTTATATAAATAAACAAATGACAACAAATAATAGCAATGATAATAACAAAAGATATG
GGATAATAAAACAGCAATTACAGCAGCAGCAACAACAACATCATCAACAACATGAACAAC
ATAGTAGATTAGTTGAAATGACAGCAGGATGCGGACAGGATTTATGGCATCATTATTTAC
AACACCACTTGATGTAATTAAAACGACACTGCAAGTTGATAATAGTAGTAATAAAACCAT
AATGAGTACAGTTAAATCAATATTGGATAGAAAAGGTGGTGTAAAAAATCTATATCTAGG
ATTAAAGCCTACTTTGGTCGGTCAAATTCCATCTTGGGCAGTTTATTTCTCAACCTATAC
ATTTTGTAAAGAACTTTTTACCAAAGAAAACGATAAACATTCATTGCTTGAXXXXXXXXX
XGGAATTGTACATTGTATGGTACCGATTTATCATGAAGAAGGTTTTAGAGGTTTATATAA
AGGTTTAGGTCCAAGTTTATTAGGTGTTTTACATGTTGGTGTTCAATTCCCATTATATGA
AAAATTTAAATCAATTTTAAAAGAAAAAAATAAAAATAAAGAATTAGGAATTGTTGAAAT
TATGATAGCATCAAGTGTATCAAAAATTATAGCGAGTGTTGTTGCATATCCTCATGAAGT
TTTAAGAGCAAGATCTCAAGATAGTTCACCTGATTCACCAAATAGGACTTATAGAGGTAA
TATCATTCAAATGTTTAAACAAATAGTTAGAGAAGAAGGTTGGCGTGGTCTTTATAGAGG
AATGGGTGTAAATTTATTGCGTGTAACTCCATCTTGTGTAATAACCTTTACTTCTTATGA
ATATATAAAAAAGTTTTTGTCTCAAAATCAAAATCATTTTTAATAATAATATGTGGGTGA
GTTGGATGTCATGCGATGGTCAGCCATGCAATGCCCAAAATCTAAAAATAATACCAAAAT
TAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAA
sequence update 1998.11.10
Translated Amino Acid sequence 
yvdvvrvnf*yt*fk**skliiiimiieil*q*nsnsnsnskkketntnryk*ik*incv
ylyk*tndnk**q***qkiwdnktaitaaatttsstt*tt**is*NDSRMRTGFMASLFT
TPLDVIKTTLQVDNSSNKTIMSTVKSILDRKGGVKNLYLGLKPTLVGQIPSWAVYFSTYT
FCKELFTKENDKHSLL---

---GIVHCMVPIYHEEGFRGLYKGLGPSLLGVLHVGVQFPLYEKFKSILKEKNKNKELGI
VEIMIASSVSKIIASVVAYPHEVLRARSQDSSPDSPNRTYRGNIIQMFKQIVREEGWRGL
YRGMGVNLLRVTPSCVITFTSYEYIKKFLSQNQNHF***yvgeldvmrwsamqcpksknn
tkikkkkkrkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
vc*cg*s*flihii*iik*innnnndnrniitik****qqqqkkrnkykqiqin*inklc
vfi*ink*qqiiamiitkdmg**nsnysssnnniinnmnnivd*lk*qqdadriygiiiy
ntt*cn*ndtas******nhneys*inig*krwckksisrikayfgrsnsilgslflnly
il*rtfyqrkr*tfia*---

---GIVHCMVPIYHEEGFRGLYKGLGPSLLGVLHVGVQFPLYEKFKSILKEKNKNKELGI
VEIMIASSVSKIIASVVAYPHEVLRARSQDSSPDSPNRTYRGNIIQMFKQIVREEGWRGL
YRGMGVNLLRVTPSCVITFTSYEYIKKFLSQNQNHF***yvgeldvmrwsamqcpksknn
tkikkkkkrkkkk

Frame B:
yvdvvrvnf*yt*fk**skliiiimiieil*q*nsnsnsnskkketntnryk*ik*incv
ylyk*tndnk**q***qkiwdnktaitaaatttsstt*tt**is*NDSRMRTGFMASLFT
TPLDVIKTTLQVDNSSNKTIMSTVKSILDRKGGVKNLYLGLKPTLVGQIPSWAVYFSTYT
FCKELFTKENDKHSLL---

---elyivwyrfimkkvlevyikv*vqvy*vfymlvfnshymknlnqf*kkkikikn*el
lkl**hqvyqkl*rvllhilmkf*eqdlkivhlihqiglievisfkclnk*lekkvgvvf
ieewv*iycv*lhlv**plllmni*ksfclkikiifnnnmwvswmscdgqpcnaqnlkii
pklkkkkkekkkk

Frame C:
mlmwlelifnthnlnnkvn********kyynnkivivtatakkkkqiqtdtnklnk*ivc
iyinkqmttnnsndnnkrygiikqqlqqqqqqhhqqheqhsrlvemtagcgqdlwhhylq
hhlm*lkrhckliivvikp**vqlnqywiekvv*kiyi*d*sllwsvkfhlgqfisqpih
fvknflpkktinihcl---

---nctlygtdls*rrf*rfi*rfrskfircftcwcsipii*ki*infkrkk*k*rirnc
*nydsikciknyseccciss*sfkskisr*ft*ftk*dl*r*yhsnv*tns*rrrlawsl
*rngckfiacnsilcnnlyfl*iykkvfvsksksfliiicg*vgchamvshampki*k*y
qn*kkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI138 (SSI138Q) /CSM/SS/SSI1-B/SSI138Q.Seq.d/                        769   0.0
SSH222 (SSH222Q) /CSM/SS/SSH2-A/SSH222Q.Seq.d/                         40   0.075
SSF371 (SSF371Q) /CSM/SS/SSF3-C/SSF371Q.Seq.d/                         40   0.075
SFJ750 (SFJ750Q) /CSM/SF/SFJ7-C/SFJ750Q.Seq.d/                         40   0.075
SFH533 (SFH533Q) /CSM/SF/SFH5-B/SFH533Q.Seq.d/                         40   0.075
AHB792 (AHB792Q) /CSM/AH/AHB7-D/AHB792Q.Seq.d/                         40   0.075
AFM785 (AFM785Q) /CSM/AF/AFM7-D/AFM785Q.Seq.d/                         40   0.075
AFH581 (AFH581Q) /CSM/AF/AFH5-D/AFH581Q.Seq.d/                         40   0.075
VFL275 (VFL275Q) /CSM/VF/VFL2-D/VFL275Q.Seq.d/                         38   0.30
AHL683 (AHL683Q) /CSM/AH/AHL6-D/AHL683Q.Seq.d/                         38   0.30
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    36  7e-04  8
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    36  0.007  9
BX566012|BX566012.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse7g10_p1c.    52  0.016  1
AC004688|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    36  0.036  9
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    38  0.18  12
BX511206|BX511206.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-122P23.    32  0.19  11
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    40  0.34  10
M84200|M84200.1 D.melanogaster transposable element HeT-A-RT473 gene sequence.    44  0.36  2
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    30  0.42  9
AC122339|AC122339.3 Mus musculus chromosome 5 clone RP23-353L10, complete sequence.    48  0.43  4
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY093232_1(AY093232|pid:none) Arabidopsis thaliana unknown prote...   147   9e-34
AY952290_1(AY952290|pid:none) Antonospora locustae putative mito...   145   2e-33
AC079374_1(AC079374|pid:none) Arabidopsis thaliana chromosome 1 ...   137   6e-31
CR380956_74(CR380956|pid:none) Candida glabrata strain CBS138 ch...   132   2e-29
CP000498_485(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...   132   2e-29
AM447234_2(AM447234|pid:none) Vitis vinifera contig VV78X023931....   131   5e-29
BT063958_1(BT063958|pid:none) Zea mays full-length cDNA clone ZM...   130   7e-29
CR382131_673(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...   124   8e-27
FM992689_870(FM992689|pid:none) Candida dubliniensis CD36 chromo...   123   1e-26
(P40556) RecName: Full=Uncharacterized mitochondrial carrier YIL...   122   2e-26
protein update 2009. 6.13
PSORT 

 psg: 0.94  gvh: 0.35  alm: 0.33  top: 0.40  tms: 0.00  mit: 0.30  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SSI138 is cyt
5' end seq. ID SSI138F
5' end seq. 
>SSI138F.Seq
GTATGTTGATGTGGTTAGAGTTAATTTTTAATACACATAATTTAAATAATAAAGTAAATT
AATAATAATAATAATGATAATAGAAATATTATAACAATAAAATAGTAATAGTAACAGCAA
CAGCAAAAAAAAAGAAACAAATACAAACAGATACAAATAAATTAAATAAATAAATTGTGT
GTATTTATATAAATAAACAAATGACAACAAATAATAGCAATGATAATAACAAAAGATATG
GGATAATAAAACAGCAATTACAGCAGCAGCAACAACAACATCATCAACAACATGAACAAC
ATAGTAGATTAGTTGAAATGACAGCAGGATGCGGACAGGATTTATGGCATCATTATTTAC
AACACCACTTGATGTAATTAAAACGACACTGCAAGTTGATAATAGTAGTAATAAAACCAT
AATGAGTACAGTTAAATCAATATTGGATAGAAAAGGTGGTGTAAAAAATCTATATCTAGG
ATTAAAGCCTACTTTGGTCGGTCAAATTCCATCTTGGGCAGTTTATTTCTCAACCTATAC
ATTTTGTAAAGAACTTTTTACCAAAGAAAACGATAAACATTCATTGCTTGA---------
-
Length of 5' end seq. 591
3' end seq. ID SSI138Z
3' end seq. 
>SSI138Z.Seq
----------GGAATTGTACATTGTATGGTACCGATTTATCATGAAGAAGGTTTTAGAGG
TTTATATAAAGGTTTAGGTCCAAGTTTATTAGGTGTTTTACATGTTGGTGTTCAATTCCC
ATTATATGAAAAATTTAAATCAATTTTAAAAGAAAAAAATAAAAATAAAGAATTAGGAAT
TGTTGAAATTATGATAGCATCAAGTGTATCAAAAATTATAGCGAGTGTTGTTGCATATCC
TCATGAAGTTTTAAGAGCAAGATCTCAAGATAGTTCACCTGATTCACCAAATAGGACTTA
TAGAGGTAATATCATTCAAATGTTTAAACAAATAGTTAGAGAAGAAGGTTGGCGTGGTCT
TTATAGAGGAATGGGTGTAAATTTATTGCGTGTAACTCCATCTTGTGTAATAACCTTTAC
TTCTTATGAATATATAAAAAAGTTTTTGTCTCAAAATCAAAATCATTTTTAATAATAATA
TGTGGGTGAGTTGGATGTCATGCGATGGTCAGCCATGCAATGCCCAAAATCTAAAAATAA
TACCAAAATTAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAA
Length of 3' end seq. 571
Connected seq. ID SSI138P
Connected seq. 
>SSI138P.Seq
GTATGTTGATGTGGTTAGAGTTAATTTTTAATACACATAATTTAAATAATAAAGTAAATT
AATAATAATAATAATGATAATAGAAATATTATAACAATAAAATAGTAATAGTAACAGCAA
CAGCAAAAAAAAAGAAACAAATACAAACAGATACAAATAAATTAAATAAATAAATTGTGT
GTATTTATATAAATAAACAAATGACAACAAATAATAGCAATGATAATAACAAAAGATATG
GGATAATAAAACAGCAATTACAGCAGCAGCAACAACAACATCATCAACAACATGAACAAC
ATAGTAGATTAGTTGAAATGACAGCAGGATGCGGACAGGATTTATGGCATCATTATTTAC
AACACCACTTGATGTAATTAAAACGACACTGCAAGTTGATAATAGTAGTAATAAAACCAT
AATGAGTACAGTTAAATCAATATTGGATAGAAAAGGTGGTGTAAAAAATCTATATCTAGG
ATTAAAGCCTACTTTGGTCGGTCAAATTCCATCTTGGGCAGTTTATTTCTCAACCTATAC
ATTTTGTAAAGAACTTTTTACCAAAGAAAACGATAAACATTCATTGCTTGA---------
-GGAATTGTACATTGTATGGTACCGATTTATCATGAAGAAGGTTTTAGAGGTTTATATAA
AGGTTTAGGTCCAAGTTTATTAGGTGTTTTACATGTTGGTGTTCAATTCCCATTATATGA
AAAATTTAAATCAATTTTAAAAGAAAAAAATAAAAATAAAGAATTAGGAATTGTTGAAAT
TATGATAGCATCAAGTGTATCAAAAATTATAGCGAGTGTTGTTGCATATCCTCATGAAGT
TTTAAGAGCAAGATCTCAAGATAGTTCACCTGATTCACCAAATAGGACTTATAGAGGTAA
TATCATTCAAATGTTTAAACAAATAGTTAGAGAAGAAGGTTGGCGTGGTCTTTATAGAGG
AATGGGTGTAAATTTATTGCGTGTAACTCCATCTTGTGTAATAACCTTTACTTCTTATGA
ATATATAAAAAAGTTTTTGTCTCAAAATCAAAATCATTTTTAATAATAATATGTGGGTGA
GTTGGATGTCATGCGATGGTCAGCCATGCAATGCCCAAAATCTAAAAATAATACCAAAAT
TAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAA
Length of connected seq. 1162
Full length Seq ID -
Full length Seq. -
Length of full length seq. -