NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI136
Library SS
(Link to library)
Clone ID SSI136
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13856-1
Original site URL
Representative seq. ID SSI136P
(Link to Original site)
Representative DNA sequence 
>SSI136 (SSI136Q) /CSM/SS/SSI1-B/SSI136Q.Seq.d/
TGTAAAAAAAACAAAGAATGAAGACTCTTTCTTTATTATTTATTGTTATTTCTTTAATCT
CCTTAATCAATGCTGATGTTTTTTCAAACATAGTTGATTTTGGATTAGTTTCAAAAAGTA
AATTTGTTAGTCAAACTTTTTCAAATATTGCACTTCCAGCATCATCATTTAATTTGGAAG
GTGTCCAAGTTGTCATTTTAAATAAAACATCAAATCAAGCTTTTAACCATAACTTCATTT
CTACATGCACAATTGATTTCACAAGTAGTGGTAGAAAAATTGTATCATTCACTGCTTCAA
ATATTGAAAATCAATTAGTTTTCCCATCACCATATTTAGTTCAAATTTCTGGTAATTTAA
ATTTAACAGTTTCAATTTATGCATTAAATGTTGAACCACAAGATATTAGTATTGCATATT
ATATGAAATGGGAAGAGAATAGTGGAAGTAAAACCATTGTTAAATTAACAAGAACTGCAA
CATCAGTAGTTTCAAATTTCTCAACATTTAGTGTACCACAAGGATCAGGTACAGGATTTG
TTATTCAAAATTCAATTCCATGGATTTCAAATGGCTGAAGCAATGGATTTCCAAGCATCT
GTATCACCAGGTATTATTXXXXXXXXXXTCACGTAACAACCTCTACCACTGGTGGTGGTT
CAACAAGTCCATCTACCACTCACGCATCAACAACTGGTGGTGGTCATACAACAGGTCCAT
CAACATCATCATCATCACATGCAACCTCTGGTCATCACGGTTCACACTCACAATCTGAAT
CTGGTTCACATTCACAATCTGAATCTGGCTCACAATCTGAATCTGGCTCACAATCACAAT
CACAATCACAATCACAATCACAATCTGAATCAGGATCAGATTCATTCACAACCACCACAG
CAGGTTCACAATCTGATTCATTCCCAGATTCATCAGATGGTCCATCTTATACATCTGGTT
CTTCTGGTTCATCAGGTACTTACATTTGGAATGGTAAAGGTGTTAAAATTGATATCTTTT
AAAATTAAACACCCATATATATGTTTCAAAAAAAAAAAAAAAAAACAACACGATAAAAAT
AAAATAATAAAATAATTTATTATTATTTACTATTATAAAAAAAA
sequence update 1998.11.10
Translated Amino Acid sequence 
ckknke*rlflyylllfl*sp*smlmffqt*lild*fqkvnllvklfqilhfqhhhliwk
vsklsf*ikhqiklltitsflhaqlisqvvveklyhsllqilkin*fshhhi*fkflvi*
i*qfqfmh*mlnhkilvlhii*ngkrivevkplln*qelqhq*FQISQHLVYHKDQVQDL
LFKIQFHGFQMAEAMDFQASVSPGII---

---HVTTSTTGGGSTSPSTTHASTTGGGHTTGPSTSSSSHATSGHHGSHSQSESGSHSQS
ESGSQSESGSQSQSQSQSQSQSESGSDSFTTTTAGSQSDSFPDSSDGPSYTSGSSGSSGT
YIWNGKGVKIDIF*n*tpiymfqkkkkkttr*k*nnkiiyyylll*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
ckknke*rlflyylllfl*sp*smlmffqt*lild*fqkvnllvklfqilhfqhhhliwk
vsklsf*ikhqiklltitsflhaqlisqvvveklyhsllqilkin*fshhhi*fkflvi*
i*qfqfmh*mlnhkilvlhii*ngkrivevkplln*qelqhq*FQISQHLVYHKDQVQDL
LFKIQFHGFQMAEAMDFQASVSPGII---

---srnnlyhwwwfnksiyhsrinnwwwsynrsiniiiitcnlwssrftlti*iwftfti
*iwlti*iwltitititititi*irirfihnhhsrfti*fiprfirwsilyiwffwfiry
lhlew*rc*n*yllklnthiyvskkkkknntikik**nnlllftiikk

Frame B:
vkktknedsffiiycyffnllnqc*cffkhs*fwisfkk*ic*snffkyctssiii*fgr
cpschfk*nikssf*p*lhfymhn*fhk*w*knciihcfky*ksisfpitifssnfw*fk
fnsfnlcikc*ttry*ycilyemgre*wk*nhc*inkncnissfkflni*cttriryric
yskfnsmdfkwlkqwiskhlyhqvl---

---HVTTSTTGGGSTSPSTTHASTTGGGHTTGPSTSSSSHATSGHHGSHSQSESGSHSQS
ESGSQSESGSQSQSQSQSQSQSESGSDSFTTTTAGSQSDSFPDSSDGPSYTSGSSGSSGT
YIWNGKGVKIDIF*n*tpiymfqkkkkkttr*k*nnkiiyyylll*kk

Frame C:
*kkqrmktlsllfivislislinadvfsnivdfglvskskfvsqtfsnialpassfnleg
vqvvilnktsnqafnhnfistctidftssgrkivsftasnienqlvfpspylvqisgnln
ltvsiyalnvepqdisiayymkweensgsktivkltrtatsvvsnfstfsvpqgsgtgfv
iqnsipwisng*sngfpsicitryy---

---t*qplplvvvqqvhlplthqqlvvviqqvhqhhhhhmqplvitvhthnlnlvhihnl
nlahnlnlahnhnhnhnhnhnlnqdqihsqppqqvhnlihsqihqmvhlihlvllvhqvl
tfgmvkvlklisfkikhpyicfkkkkkkqhdknkiik*fiiiyyykk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI136 (SSI136Q) /CSM/SS/SSI1-B/SSI136Q.Seq.d/                       1524   0.0
VFI322 (VFI322Q) /CSM/VF/VFI3-A/VFI322Q.Seq.d/                       1179   0.0
VFK754 (VFK754Q) /CSM/VF/VFK7-C/VFK754Q.Seq.d/                       1176   0.0
VFI833 (VFI833Q) /CSM/VF/VFI8-B/VFI833Q.Seq.d/                       1174   0.0
VFG132 (VFG132Q) /CSM/VF/VFG1-B/VFG132Q.Seq.d/                       1170   0.0
VFE133 (VFE133Q) /CSM/VF/VFE1-B/VFE133Q.Seq.d/                       1170   0.0
VFH404 (VFH404Q) /CSM/VF/VFH4-A/VFH404Q.Seq.d/                       1168   0.0
VFL859 (VFL859Q) /CSM/VF/VFL8-C/VFL859Q.Seq.d/                       1166   0.0
VFI233 (VFI233Q) /CSM/VF/VFI2-B/VFI233Q.Seq.d/                       1166   0.0
VFA862 (VFA862Q) /CSM/VF/VFA8-C/VFA862Q.Seq.d/                       1160   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds.    62  2e-05  1
AL833783|AL833783.8 Mouse DNA sequence from clone RP23-287B11 on chromosome 4.    44  0.007  4
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    34  0.028  7
AL133496|AL133496.1 Drosophila melanogaster clone BACR43C24 WORKING DRAFT SEQUENCE; 144 unordered pieces.    44  0.034  3
AC020297|AC020297.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    44  0.047  2
AL954173|AL954173.8 Zebrafish DNA sequence from clone CH211-272N13.    36  0.068  5
AC120783|AC120783.5 Mus musculus clone RP24-147J7, WORKING DRAFT SEQUENCE, 6 unordered pieces.    44  0.094  3
AC079993|AC079993.2 Homo sapiens chromosome 8 clone RP11-496M14, WORKING DRAFT SEQUENCE, 20 unordered pieces.    40  0.20  6
AC093438|AC093438.2 Drosophila melanogaster 3L BAC RP98-26C20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence.    44  0.29  2
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    38  0.33  5
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000123_158(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    35   3.6
protein update 2009. 2. 1
PSORT 

 psg: 0.60  gvh: 0.42  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSI136 is nuc
5' end seq. ID SSI136F
5' end seq. 
>SSI136F.Seq
TGTAAAAAAAACAAAGAATGAAGACTCTTTCTTTATTATTTATTGTTATTTCTTTAATCT
CCTTAATCAATGCTGATGTTTTTTCAAACATAGTTGATTTTGGATTAGTTTCAAAAAGTA
AATTTGTTAGTCAAACTTTTTCAAATATTGCACTTCCAGCATCATCATTTAATTTGGAAG
GTGTCCAAGTTGTCATTTTAAATAAAACATCAAATCAAGCTTTTAACCATAACTTCATTT
CTACATGCACAATTGATTTCACAAGTAGTGGTAGAAAAATTGTATCATTCACTGCTTCAA
ATATTGAAAATCAATTAGTTTTCCCATCACCATATTTAGTTCAAATTTCTGGTAATTTAA
ATTTAACAGTTTCAATTTATGCATTAAATGTTGAACCACAAGATATTAGTATTGCATATT
ATATGAAATGGGAAGAGAATAGTGGAAGTAAAACCATTGTTAAATTAACAAGAACTGCAA
CATCAGTAGTTTCAAATTTCTCAACATTTAGTGTACCACAAGGATCAGGTACAGGATTTG
TTATTCAAAATTCAATTCCATGGATTTCAAATGGCTGAAGCAATGGATTTCCAAGCATCT
GTATCACCAGGTATTATT----------
Length of 5' end seq. 618
3' end seq. ID SSI136Z
3' end seq. 
>SSI136Z.Seq
----------TCACGTAACAACCTCTACCACTGGTGGTGGTTCAACAAGTCCATCTACCA
CTCACGCATCAACAACTGGTGGTGGTCATACAACAGGTCCATCAACATCATCATCATCAC
ATGCAACCTCTGGTCATCACGGTTCACACTCACAATCTGAATCTGGTTCACATTCACAAT
CTGAATCTGGCTCACAATCTGAATCTGGCTCACAATCACAATCACAATCACAATCACAAT
CACAATCTGAATCAGGATCAGATTCATTCACAACCACCACAGCAGGTTCACAATCTGATT
CATTCCCAGATTCATCAGATGGTCCATCTTATACATCTGGTTCTTCTGGTTCATCAGGTA
CTTACATTTGGAATGGTAAAGGTGTTAAAATTGATATCTTTTAAAATTAAACACCCATAT
ATATGTTTCAAAAAAAAAAAAAAAAAACAACACGATAAAAATAAAATAATAAAATAATTT
ATTATTATTTACTATTATAAAAAAAA
Length of 3' end seq. 496
Connected seq. ID SSI136P
Connected seq. 
>SSI136P.Seq
TGTAAAAAAAACAAAGAATGAAGACTCTTTCTTTATTATTTATTGTTATTTCTTTAATCT
CCTTAATCAATGCTGATGTTTTTTCAAACATAGTTGATTTTGGATTAGTTTCAAAAAGTA
AATTTGTTAGTCAAACTTTTTCAAATATTGCACTTCCAGCATCATCATTTAATTTGGAAG
GTGTCCAAGTTGTCATTTTAAATAAAACATCAAATCAAGCTTTTAACCATAACTTCATTT
CTACATGCACAATTGATTTCACAAGTAGTGGTAGAAAAATTGTATCATTCACTGCTTCAA
ATATTGAAAATCAATTAGTTTTCCCATCACCATATTTAGTTCAAATTTCTGGTAATTTAA
ATTTAACAGTTTCAATTTATGCATTAAATGTTGAACCACAAGATATTAGTATTGCATATT
ATATGAAATGGGAAGAGAATAGTGGAAGTAAAACCATTGTTAAATTAACAAGAACTGCAA
CATCAGTAGTTTCAAATTTCTCAACATTTAGTGTACCACAAGGATCAGGTACAGGATTTG
TTATTCAAAATTCAATTCCATGGATTTCAAATGGCTGAAGCAATGGATTTCCAAGCATCT
GTATCACCAGGTATTATT----------TCACGTAACAACCTCTACCACTGGTGGTGGTT
CAACAAGTCCATCTACCACTCACGCATCAACAACTGGTGGTGGTCATACAACAGGTCCAT
CAACATCATCATCATCACATGCAACCTCTGGTCATCACGGTTCACACTCACAATCTGAAT
CTGGTTCACATTCACAATCTGAATCTGGCTCACAATCTGAATCTGGCTCACAATCACAAT
CACAATCACAATCACAATCACAATCTGAATCAGGATCAGATTCATTCACAACCACCACAG
CAGGTTCACAATCTGATTCATTCCCAGATTCATCAGATGGTCCATCTTATACATCTGGTT
CTTCTGGTTCATCAGGTACTTACATTTGGAATGGTAAAGGTGTTAAAATTGATATCTTTT
AAAATTAAACACCCATATATATGTTTCAAAAAAAAAAAAAAAAAACAACACGATAAAAAT
AAAATAATAAAATAATTTATTATTATTTACTATTATAAAAAAAA
Length of connected seq. 1114
Full length Seq ID -
Full length Seq. -
Length of full length seq. -