>SSI130 (SSI130Q) /CSM/SS/SSI1-B/SSI130Q.Seq.d/
XXXXXXXXXXAGATGGTAAATTAGACCCAACTAATGATTTAGCATTGATTTCATTACCTT
TTTCAAGCGGAATTAGAAATTGTCCTGGTGTTGGTTTTGCAGAGTATGAATTATTCTTAT
TATTTTCAAATATCATTTTAAATTTTCATTTATCAAGTCCAAATAATCTAAAACTCAATG
AAAGTGGTCATTTTGGTCTTACAATGAAACCATTTCCATTTTTAGTTNANNNNNNNNNNN
NNTTATAATAATAATAATAATAATAATAATAATAGTAATGTAAATAGTAATAATAACCAA
GATGATAAATTATTTTGTAAAGCGTGTAAAAAATTATTTACTTCTGAAAATGTTTTTAAT
GGTCATTTAAAAGGTAAAAAGCATATACAAAATGAAGAAAAAATGAATACTAATAAAGAT
AATAAAGATGGTGATAATAATAATAATAATAATAATAAAAAAAAAAAA

---mvn*tqlmi*h*fhylfqaeleivlvlvlqsmnysyyfqisf*ifiyqvqii*nsmk
vvilvlq*nhfhf*XXXXXXYNNNNNNNNNSNVNSNNNQDDKLFCKACKKLFTSENVFNG
HLKGKKHIQNEEKMNTNKDNKDGDNNNNNNNKKKK

Frame A:
---dgkldptndlalislpfssgirncpgvgfaeyelfllfsniilnfhlsspnnlklne
sghfgltmkpfpflvxxxxxl***********ck****pr**iil*sv*kiiyf*kcf*w
sfkr*kaytk*rkney**r**rw*********kkk


Frame B:
---mvn*tqlmi*h*fhylfqaeleivlvlvlqsmnysyyfqisf*ifiyqvqii*nsmk
vvilvlq*nhfhf*XXXXXXYNNNNNNNNNSNVNSNNNQDDKLFCKACKKLFTSENVFNG
HLKGKKHIQNEEKMNTNKDNKDGDNNNNNNNKKKK


Frame C:
---w*irpn**fsidfitffkrn*klswcwfcrv*iiliifkyhfkfsfiksk*sktq*k
wsfwsynetisifsxxxxxxiiiiiiiiiivm*iviitkminyfvkrvknylllkmflmv
i*kvksiykmkkk*ilikiikmviiiiiiiikkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI130 (SSI130Q) /CSM/SS/SSI1-B/SSI130Q.Seq.d/                        430   e-120
SSC405 (SSC405Q) /CSM/SS/SSC4-A/SSC405Q.Seq.d/                        301   5e-81
VFJ134 (VFJ134Q) /CSM/VF/VFJ1-B/VFJ134Q.Seq.d/                         42   0.007
SSK480 (SSK480Q) /CSM/SS/SSK4-D/SSK480Q.Seq.d/                         38   0.12
SSH671 (SSH671Q) /CSM/SS/SSH6-C/SSH671Q.Seq.d/                         38   0.12
SSC477 (SSC477Q) /CSM/SS/SSC4-D/SSC477Q.Seq.d/                         38   0.12
SFG592 (SFG592Q) /CSM/SF/SFG5-D/SFG592Q.Seq.d/                         38   0.12
VHP392 (VHP392Q) /CSM/VH/VHP3-D/VHP392Q.Seq.d/                         36   0.46
VHN231 (VHN231Q) /CSM/VH/VHN2-B/VHN231Q.Seq.d/                         36   0.46
VHL491 (VHL491Q) /CSM/VH/VHL4-D/VHL491Q.Seq.d/                         36   0.46

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL590308|AL590308.8 Human DNA sequence from clone RP11-501K14 on chromosome 6.    42  0.009  4
AZ550203|AZ550203.1 ENTEA27TRB Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    32  0.038  4
AC139344|AC139344.12 Medicago truncatula clone mth2-34b22, WORKING DRAFT SEQUENCE, 2 ordered pieces.    38  0.26  5
AC129460|AC129460.5 Rattus norvegicus clone CH230-5O22, WORKING DRAFT SEQUENCE, 2 unordered pieces.    40  0.27  2
AL929516|AL929516.15 Zebrafish DNA sequence from clone CH211-10C20 in linkage group 1.    36  0.61  6
AZ099632|AZ099632.1 RPCI-23-29K7.TV RPCI-23 Mus musculus genomic clone RPCI-23-29K7, genomic survey sequence.    36  0.78  2
AC023344|AC023344.4 Homo sapiens BAC clone RP11-395G23 from 8, complete sequence.    38  0.78  5
AP001353|AP001353.3 Homo sapiens genomic DNA, chromosome 18q12 clone:RP11-705O9, WORKING DRAFT SEQUENCE, 13 unordered pieces.    36  0.90  4
BZ031896|BZ031896.1 oem76g12.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    36  0.92  2
AC113383|AC113383.2 Homo sapiens chromosome 5 clone RP11-336F20, complete sequence.    36  1.2  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR382137_474(CR382137|pid:none) Debaryomyces hansenii strain CBS...    42   0.005
(Q1ZXN4) RecName: Full=Probable cytochrome P450 519C1;          ...    40   0.024
(Q54E98) RecName: Full=Putative cytochrome P450 520B1;          ...    40   0.024
AC115680_29(AC115680|pid:none) Dictyostelium discoideum chromoso...    40   0.024
CR382132_403(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...    40   0.031
D88481(D88481) protein C16A3.3 [imported] - Caenorhabditis elega...    39   0.041
EU692918_1(EU692918|pid:none) Caenorhabditis brenneri clone 6D17...    39   0.054
(Q54EM5) RecName: Full=Probable cytochrome P450 519D1;          ...    39   0.054
CP000501_254(CP000501|pid:none) Pichia stipitis CBS 6054 chromos...    39   0.070
EF427659_1(EF427659|pid:none) Chaetodon punctatofasciatus cytoch...    38   0.092

 psg: 0.54  gvh: 0.23  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.12  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSI130 is nuc

>SSI130Z.Seq
----------AGATGGTAAATTAGACCCAACTAATGATTTAGCATTGATTTCATTACCTT
TTTCAAGCGGAATTAGAAATTGTCCTGGTGTTGGTTTTGCAGAGTATGAATTATTCTTAT
TATTTTCAAATATCATTTTAAATTTTCATTTATCAAGTCCAAATAATCTAAAACTCAATG
AAAGTGGTCATTTTGGTCTTACAATGAAACCATTTCCATTTTTAGTTNANNNNNNNNNNN
NNTTATAATAATAATAATAATAATAATAATAATAGTAATGTAAATAGTAATAATAACCAA
GATGATAAATTATTTTGTAAAGCGTGTAAAAAATTATTTACTTCTGAAAATGTTTTTAAT
GGTCATTTAAAAGGTAAAAAGCATATACAAAATGAAGAAAAAATGAATACTAATAAAGAT
AATAAAGATGGTGATAATAATAATAATAATAATAATAAAAAAAAAAAA